Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6d08
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    27   0.17 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.2  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   2.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   2.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 156 TFTTLQITSLKYTLNKNHCNST 91
           T TT  +TS K T+ +NH NST
Sbjct: 327 TTTTSPMTSTKSTIVRNHLNST 348


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 243  IIQSIRECDDPSVSSVWRHLVRRCVRHLGTFTTLQITSLKYT 118
            IIQ  +   +P ++ +WR +    VR     TT+     KYT
Sbjct: 1143 IIQGYKLHYEPILADMWRSVDEMEVRKTSALTTVLTGLRKYT 1184


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 243  IIQSIRECDDPSVSSVWRHLVRRCVRHLGTFTTLQITSLKYT 118
            IIQ  +   +P ++ +WR +    VR     TT+     KYT
Sbjct: 1139 IIQGYKLHYEPILADMWRSVDEMEVRKTSALTTVLTGLRKYT 1180


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 343 LNHSIGMLLSFFGGPLLRRF 402
           + +S  +L   +GGPLLR F
Sbjct: 214 ITNSTPLLKKLYGGPLLRIF 233


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 343 LNHSIGMLLSFFGGPLLRRF 402
           + +S  +L   +GGPLLR F
Sbjct: 229 ITNSTPLLKKLYGGPLLRIF 248


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 24  GVNVCLKYYFINDDIP 71
           G+NV LK Y I+ ++P
Sbjct: 317 GINVTLKGYCIDMEVP 332


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 211 WVITFAYALNNVVVLPLISSFGLVFQEAFDET 306
           ++I FAY +  +VV  + +       EAF+E+
Sbjct: 816 YMIAFAYPIMLIVVCTVYAVLTRKIPEAFNES 847


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,589
Number of Sequences: 438
Number of extensions: 3549
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)