Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6c21
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 38 0.001
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 33 0.029
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.20
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.63
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.63
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 29 0.83
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 29 0.83
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.1
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.4
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 1.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 4.4
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 4.4
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 5.8
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 5.8
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 5.8
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 7.7
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 7.7
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/80 (33%), Positives = 39/80 (48%)
Frame = +2
Query: 443 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPS 622
VTP P S S PP +T T S P +++ S T + T +ST P+TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412
Query: 623 NTTGTLSPPCTKATSCSSST 682
+ S P T T+C++ST
Sbjct: 413 VPPTSSSTPLT-TTNCTTST 431
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 443 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 619
+TP P S S+P P T+ + S P T ST + + + S+T + P P
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 620 SNTTGTLSPPCTKATSCSSST 682
+T + S P A++ S+ T
Sbjct: 307 PTSTSSTSTPPPPASTSSTGT 327
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 443 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTV-IAP-LT 616
VTP P S S PP +T T S P +++ S T + T +ST + P +
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 617 PSNTTGTLSPPCTKATSCSSST 682
P++T+ T +PP +TS + ++
Sbjct: 361 PTSTSSTSTPPPPASTSSTGTS 382
Score = 32.3 bits (70), Expect = 0.067
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Frame = +2
Query: 443 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 619
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 620 -------SNTTGTLSPPCTKATSCSSS 679
S+T+ + P T +T +SS
Sbjct: 250 TVPPTSTSSTSIPIPPTSTSSTDTNSS 276
Score = 29.1 bits (62), Expect = 0.63
Identities = 28/83 (33%), Positives = 37/83 (44%)
Frame = +2
Query: 434 LHSVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPL 613
L++ TP T P S S W +T P T ++ S +T SST I PL
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTT-------PITGTSTSKVT--------SSTSI-PL 641
Query: 614 TPSNTTGTLSPPCTKATSCSSST 682
T +N T T T ++ SSST
Sbjct: 642 TSTNRTSTTFTSSTSISTSSSST 664
Score = 28.7 bits (61), Expect = 0.83
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +2
Query: 440 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 619
S P T + + S+PP +T + + PP + S+ +ST P +
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS-------------TSTPPPPAST 376
Query: 620 SNTTGTLSPPCTKATSCSSST 682
S+T + SP + +TSC++ST
Sbjct: 377 SSTGTSSSPLLSTSTSCTTST 397
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 440 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMT--VSSTVIAPL 613
S P T + + S+PP +T + + PP + S+ S+ + SS+ +
Sbjct: 276 SPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPST 335
Query: 614 TPSNTTGTLSPPCTKATS 667
+ S TT T PP +T+
Sbjct: 336 STSCTTSTSIPPTGNSTT 353
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +2
Query: 440 SVTPKTKPARKSPGSLPPCWKTTE--YTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPL 613
SV + P +P + C +T YTS +T + T + T + PL
Sbjct: 432 SVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPL 491
Query: 614 TPSNTTGTLSPPCTKATSCSSS 679
T +N T + S P T SS+
Sbjct: 492 TTTNCTTSTSVPYTSTPVTSSN 513
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.5 bits (73), Expect = 0.029
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 503 TTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKATSCSS 676
+T TS PP T+ ++ T ++T + P T NTT T +PP T S ++
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTT 120
Score = 32.7 bits (71), Expect = 0.051
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +2
Query: 437 HSVTPKTKPARKSPGSLPPCWKTTEY--TSRSCPPKT--NST*SSITRKVLVMTVSSTVI 604
H+ T T P S + TT T+ + PP T NST + + V T +TV+
Sbjct: 77 HNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNT--TTVV 134
Query: 605 APLTPSNTTGTLSPPCTKATSCS 673
P T NTT T+ PP T A + S
Sbjct: 135 PPTTHVNTT-TVVPPTTHANTTS 156
Score = 30.3 bits (65), Expect = 0.27
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 485 LPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCT 655
+PP + T+ + PP T+ ++ + ++T P T N+T T+ PP T
Sbjct: 70 VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTT 126
Score = 29.9 bits (64), Expect = 0.36
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +2
Query: 443 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPS 622
V P + + ++PP T+ T+ + PP T+ ++ T S+T + P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 623 NTTGTLSPPCT 655
T T+ PP T
Sbjct: 128 VNTTTVVPPTT 138
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 0.20
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 552 QVLFVFGGHDLEVYSVVFQHGGK 484
+V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.63
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Frame = +2
Query: 455 TKPARKSPGSLPPCWKTTEYTSRSCPP--KTNST*SSITRKVLVMTVSSTVIA-----PL 613
T A +P S +T TS S P NST ++ + +V+ST PL
Sbjct: 316 TTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPL 375
Query: 614 TPSNTTGTLSPPCTKATSCSSST 682
T N+T S T TS +S+T
Sbjct: 376 TSVNSTSATSASSTPLTSANSTT 398
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 500 KTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLS-PPCTKAT 664
+TTE T+ P T ++ S T ++ T T I P+ P N + ++S PP T T
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAPPTTSFT 905
Score = 27.1 bits (57), Expect = 2.5
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 473 SPGSLP-PCWKTTEYTSRSCPPKT--NST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLS 643
+P S P +T TS S P T NST ++ + +VSS T +++T S
Sbjct: 286 TPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSS 345
Query: 644 PPCTKATSCSSS 679
T ATS SS+
Sbjct: 346 VNSTTATSASST 357
Score = 27.1 bits (57), Expect = 2.5
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Frame = +2
Query: 503 TTEYTSRSCPP--KTNST*SSITRKVLVMTVSSTVIA-----PLTPSNTTGTLSPPCTKA 661
+T TS S P NST ++ + +V+ST PLT N+T S T
Sbjct: 446 STTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPL 505
Query: 662 TSCSSST 682
TS +S+T
Sbjct: 506 TSANSTT 512
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 578 VMTVSSTVIAPLTPSNTTGTLSPPCTKATSCSSST 682
V+ SS PL+ +N+T S T TS +S+T
Sbjct: 528 VLPTSSVSSTPLSSANSTTATSASSTPLTSVNSTT 562
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.63
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 169 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 312
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 657 FVHGGLKVPVVFEGVSGAITVDDTVIT 577
F H + V G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 28.7 bits (61), Expect = 0.83
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 602 IAPLTPSNTTGTLSPPCTKATSCSSS 679
+ PL PS+ +G LSPP KA S S
Sbjct: 146 VHPLRPSHVSGPLSPPEPKAASVDHS 171
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 515 TSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP--SNTTGTLSPPCTKATSCSSST 682
+S + T T SS+ +T SSTV+ TP S+T SPP T +T +SST
Sbjct: 1610 SSTALNTSTPITSSSVLNSSTPIT-SSTVLNSSTPITSSTALNTSPPITSSTVVNSST 1666
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 136 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 252
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 572 PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 423
PF+L++ R C D +KY L+ + F + L+V +L A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +2
Query: 473 SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPC 652
SP S T+ S S P T+S+ SS + + + SST + + S+ + S
Sbjct: 221 SPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSS 280
Query: 653 TKATSCSSS 679
+ TS SS+
Sbjct: 281 SSPTSTSST 289
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 4.4
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = -1
Query: 594 DDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLL 415
D + + +R+ + GG E YS + Q KL + N VVLL
Sbjct: 1233 DTERVLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKE-----LAQRLNTFNAHVVLL 1287
Query: 414 VDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 307
D + G + + L LL +D +++ +V FDDF+
Sbjct: 1288 QD-IHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 525 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 424
DLE +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 373 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 465
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 606 AITVDDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGK 484
A V+D I R + + + +V + GH+ E+YS+ F GK
Sbjct: 350 ATGVEDQQI-RIWDIAQKRVYRLLTGHEQEIYSLDFSKDGK 389
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -2
Query: 272 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 93
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 92 EASAHTARTKA 60
+A A T A
Sbjct: 58 NGAAKEAATAA 68
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 7.7
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -2
Query: 230 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 69
+LI SP S S ++ V S M L+Y+ S + +S+ A + L+ + T
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343
Query: 68 TKANKVSLI 42
+ N VSLI
Sbjct: 344 FQENVVSLI 352
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.4 bits (53), Expect = 7.7
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Frame = +1
Query: 316 VKSYFPIQFRVIFTEQTVKLINKRDHHALKL----IDQQNH-NKIAFGDSKDKTSKKVSW 480
+K Y P + + VK IN+ D LKL + N + I+FG KD SK +S
Sbjct: 139 IKKYSPTSLEL----EQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSL 194
Query: 481 KFTPVLENNRVYFKIMSTEDKQYL-KLDN-TKGSSDDRIIYGDSTADTFKH 627
P+L + + F + Y K +N SS D + DS A+ KH
Sbjct: 195 VTIPILYLDFLQFSFPVVFQRSYYPKSENRVYYSSFDLELNLDSPAE-LKH 244
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +1
Query: 355 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 534
+ T K +N+++H+ L L ++ FG S D +S ++ + +N YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201
Query: 535 EDKQYLK 555
+ ++K
Sbjct: 202 DGFDFIK 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,327
Number of Sequences: 5004
Number of extensions: 62924
Number of successful extensions: 325
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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