Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6c19
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)          236   1e-62
SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)              172   2e-43
SB_44638| Best HMM Match : TFIIB (HMM E-Value=0.0079)                  33   0.23 
SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)                   32   0.52 
SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                   29   3.7  
SB_37547| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_28327| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_12464| Best HMM Match : Nsp1_C (HMM E-Value=0)                      28   6.4  
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               28   6.4  
SB_13186| Best HMM Match : Nsp1_C (HMM E-Value=6.8e-07)                28   6.4  
SB_33023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)                   28   8.5  

>SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)
          Length = 411

 Score =  236 bits (577), Expect = 1e-62
 Identities = 111/181 (61%), Positives = 138/181 (76%)
 Frame = +1

Query: 148 IASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPLLAGVLPTANPEEAFKDVAA 327
           I SG     + P+ LHLLDI PMMG L GVV+EL DCA+PLL  V+ T + E+AF D+  
Sbjct: 102 IPSGVNVHIELPIILHLLDITPMMGALGGVVLELQDCAIPLLHEVVATDDAEKAFTDIDV 161

Query: 328 AFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVARKDVKVLVVGNPANTNALICSKY 507
           A LVGAMPR+EGMERKDLL+AN +IF+ QG+ALDKVA+K  K+LVVGNPANTN LI  ++
Sbjct: 162 AILVGAMPRREGMERKDLLSANAKIFEAQGKALDKVAKKTCKILVVGNPANTNCLIAQRW 221

Query: 508 APSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVIIWGNHSSTQFPDASNAVAIVG 687
           APSIPKENF+ +TRLDQNR  SQ+A ++ + V  VK VIIWGNHS+TQ+PD ++    V 
Sbjct: 222 APSIPKENFSCLTRLDQNRGGSQIAGRLNLRVDQVKNVIIWGNHSATQYPDVNHGKVCVN 281

Query: 688 G 690
           G
Sbjct: 282 G 282


>SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)
          Length = 462

 Score =  172 bits (419), Expect = 2e-43
 Identities = 80/199 (40%), Positives = 125/199 (62%)
 Frame = +1

Query: 76  KMAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELAD 255
           K   P+RV V+ A+G +AY +L  +  G VFG Q+ V ++LLD       L+GV  E+ D
Sbjct: 127 KKINPLRVCVSKASGPLAYGMLASLVQGEVFGFQEEVSIYLLDTPENQEALQGVAYEIED 186

Query: 256 CALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKV 435
           CA PL  GV  T++P  AFKD +   L+      EG ++K+ L ++ ++F++ G+AL+  
Sbjct: 187 CAWPLFRGVHITSDPAVAFKDASVVVLLDGKAINEGTDKKEYLLSHAKLFRDYGKALEAH 246

Query: 436 ARKDVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVK 615
           A+ D KVL  G PAN +  I SK+APSI K+NF +++R+++NRA+  +A ++ V    +K
Sbjct: 247 AKPDCKVLTAGGPANFSTFIASKFAPSIQKKNFVSLSRIEENRAKGLIAKRLNVNTAGIK 306

Query: 616 RVIIWGNHSSTQFPDASNA 672
            +I+WGN     +PDAS+A
Sbjct: 307 DLIVWGNPGFNHYPDASHA 325


>SB_44638| Best HMM Match : TFIIB (HMM E-Value=0.0079)
          Length = 472

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 273 QKWQSTVSQLHDNTFKYTHHRRNIKKVEEDRL 178
           + W  T S +HD+ F++ H RR IK +E++ L
Sbjct: 152 RSWLPTWSAVHDDLFRHHHKRRFIKSLEDELL 183


>SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 273 QKWQSTVSQLHDNTFKYTHHRRNIKKVEEDRLLRS 169
           + W  T   +H+  FKY H RR ++ +E++ L R+
Sbjct: 332 RSWLPTWGAIHEELFKYHHKRRFLRDLEDELLPRT 366


>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
          Length = 961

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 285 KNPSQKWQSTVSQLHDNTFKYTHHRRNIKKVEEDRL--LRSKNCSRRNLIK 139
           +N  +KW+S++ Q  D   +Y   RRN  +  E++L  LR ++    N++K
Sbjct: 227 ENNRKKWESSMQQRRDKEVEYMEARRNRVEDYENQLQTLRIQDAEEYNMVK 277


>SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 267 WQSTVSQLHDNTFKYTHHRRNIKKVEEDRL 178
           W  T   +H+  FKY H RR ++ +E++ L
Sbjct: 235 WLPTWGAIHEELFKYHHKRRFLRDLEDELL 264


>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
 Frame = -2

Query: 475 LGCQQQGPSH---LYEPLCPKPG 416
           LGC  QGP H   L+E  CP PG
Sbjct: 482 LGCPWQGPHHELALHEGACPHPG 504


>SB_37547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 380 FLLLMCASSKSRARLWTKWLVKM*RSLLLATQPIQML*YVLSMLHLFQ 523
           FLLL  A +K  A+    +L K  +  L+A++P+Q++ YV   +  F+
Sbjct: 500 FLLLSLACAKVMAQDRNIYLTKDGKHSLIASEPMQIIEYVKEQVKFFR 547


>SB_28327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 471 VANNKDLHIFTSHFVQSLALLFEDAHISSKKIL 373
           + N KDLHI+TS  ++ L +  E A    K IL
Sbjct: 131 LVNEKDLHIWTSTLLRVLRVKIEQAEQQKKGIL 163


>SB_12464| Best HMM Match : Nsp1_C (HMM E-Value=0)
          Length = 467

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 368 SIPSFLGIAPTRKAAATSLKASSGFAVGRT-PAKSGRAQSANSMTTPSSTPIIG 210
           ++  FL  APT    AT     SGF  G   P  +G +    + + PS+TP  G
Sbjct: 73  TLAPFLTAAPTG-LTATPAATGSGFQFGTAAPGAAGVSFKLGTASAPSTTPATG 125


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
 Frame = -1

Query: 470  LPTTRTFTSLRATLSKAWPCSLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKAS-SGF 294
            +PTT   ++L ATL    P +  + T     S L  P+ +   P  K   T + +S +  
Sbjct: 797  VPTTAVTSTLIATLQSPTPQTTTVATPRTVISALPSPTVVPTVPPAKPVPTPVVSSLTTP 856

Query: 293  AVGRTPAKSGRAQS--ANSMTTPSSTPIIGAISRRWRKTGC*G 171
             V  T   + +AQ+  A S+  P+S       S   R  G  G
Sbjct: 857  LVSATVLNASQAQTRVATSVAAPTSAQYSAVTSSSPRGQGVAG 899


>SB_13186| Best HMM Match : Nsp1_C (HMM E-Value=6.8e-07)
          Length = 329

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 368 SIPSFLGIAPTRKAAATSLKASSGFAVGRT-PAKSGRAQSANSMTTPSSTPIIG 210
           ++  FL  APT    AT     SGF  G   P  +G +    + + PS+TP  G
Sbjct: 73  TLAPFLTAAPTG-LTATPAATGSGFQFGTAAPGAAGVSFKLGTASAPSTTPATG 125


>SB_33023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 24/75 (32%), Positives = 33/75 (44%)
 Frame = +1

Query: 217 MGVLEGVVMELADCALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANV 396
           M VL  +V+  A CAL  LA   P   PE+  K V  A LV  + +   +   D     +
Sbjct: 1   MKVLTALVIFAACCALFTLASAKPVEKPEKP-KKVNPARLVDYLTKYGYLSPIDPRNGKI 59

Query: 397 RIFKEQGQALDKVAR 441
           R  KE   A+  + R
Sbjct: 60  RTDKELKTAIKTLQR 74


>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
          Length = 599

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
 Frame = -1

Query: 431 LSKAWP--CSLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAVGRTP----AK 270
           LSKA P  CS  M    +  S  S+P+    A    A+A+S   SS  ++  +     A 
Sbjct: 314 LSKAGPSNCSCDMNASPSALSASSLPASASSAIASSASASSASMSSASSLSASASSNIAS 373

Query: 269 SGRAQSANSMTTPSST 222
           S  A SAN+ +  +S+
Sbjct: 374 SDIASSANASSAKTSS 389


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,718,280
Number of Sequences: 59808
Number of extensions: 453424
Number of successful extensions: 1440
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)