Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6c19
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56720.1 68418.m07079 malate dehydrogenase, cytosolic, putati... 239 2e-63
At5g43330.1 68418.m05296 malate dehydrogenase, cytosolic, putati... 235 2e-62
At1g04410.1 68414.m00432 malate dehydrogenase, cytosolic, putati... 235 2e-62
At5g58330.2 68418.m07304 malate dehydrogenase [NADP], chloroplas... 215 2e-56
At5g58330.1 68418.m07303 malate dehydrogenase [NADP], chloroplas... 215 2e-56
At5g58330.3 68418.m07302 malate dehydrogenase [NADP], chloroplas... 202 1e-52
At3g47520.1 68416.m05168 malate dehydrogenase [NAD], chloroplast... 58 7e-09
At2g22780.1 68415.m02702 malate dehydrogenase, glyoxysomal, puta... 57 1e-08
At3g03580.1 68416.m00361 pentatricopeptide (PPR) repeat-containi... 30 1.3
At3g19170.1 68416.m02434 peptidase M16 family protein / insulina... 29 2.3
At1g49630.3 68414.m05566 peptidase M16 family protein / insulina... 29 2.3
At1g49630.2 68414.m05565 peptidase M16 family protein / insulina... 29 2.3
At1g49630.1 68414.m05564 peptidase M16 family protein / insulina... 29 2.3
At5g55960.1 68418.m06979 expressed protein 28 5.2
At5g25350.1 68418.m03007 F-box family protein contains Pfam PF00... 28 5.2
At2g23160.1 68415.m02767 F-box family protein contains Pfam PF00... 28 5.2
At3g09000.1 68416.m01053 proline-rich family protein 28 6.9
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta... 27 9.2
>At5g56720.1 68418.m07079 malate dehydrogenase, cytosolic, putative
similar to cytosolic malate dehydrogenase from
Mesembryanthemum crystallinum [SP|O24047], Medicago
sativa [SP|O48905], Prunus persica [GI:15982948];
contains InterPro entry IPR001236: Lactate/malate
dehydrogenase
Length = 339
Score = 239 bits (584), Expect = 2e-63
Identities = 114/196 (58%), Positives = 140/196 (71%)
Frame = +1
Query: 85 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 264
+PIRV++TGAAG I Y++ IA G + GP QP+ LHLLDI P LE V MEL D A
Sbjct: 10 DPIRVLITGAAGNIGYAIAPMIARGIMLGPDQPMILHLLDIEPASSSLEAVKMELQDSAF 69
Query: 265 PLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVARK 444
PLL GV+ T N EA KDV ++G PR GMERKD+++ NV I+K Q AL++ A
Sbjct: 70 PLLKGVIATTNVVEACKDVNIVIMIGGFPRIAGMERKDVMSKNVVIYKAQASALERYASD 129
Query: 445 DVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVI 624
D KVLVV NPANTNALI ++APSIP+EN T +TRLD NRA +QLA K+ VPV VK VI
Sbjct: 130 DCKVLVVANPANTNALILKEFAPSIPEENITCLTRLDHNRALAQLADKLSVPVSSVKNVI 189
Query: 625 IWGNHSSTQFPDASNA 672
+WGNHSSTQ+PD ++A
Sbjct: 190 VWGNHSSTQYPDTNHA 205
>At5g43330.1 68418.m05296 malate dehydrogenase, cytosolic, putative
strong similarity to cytosolic malate dehydrogenase (EC
1.1.1.37) SP|O24047 {Mesembryanthemum crystallinum},
SP|O48905 {Medicago sativa}, [Prunus persica]
GI:15982948; contains InterPro entry IPR001236:
Lactate/malate dehydrogenase
Length = 332
Score = 235 bits (576), Expect = 2e-62
Identities = 115/205 (56%), Positives = 143/205 (69%)
Frame = +1
Query: 85 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 264
EP+RV+VTGAAGQI Y+L+ IA G + G QPV LH+LDI L GV MEL D A
Sbjct: 4 EPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVDAAF 63
Query: 265 PLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVARK 444
PLL GV+ T + EA V A +VG PRKEGMERKD+++ NV I+K Q AL+K A
Sbjct: 64 PLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAP 123
Query: 445 DVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVI 624
+ KVLVV NPANTNALI ++APSIP++N T +TRLD NRA Q++ ++ VPV DVK VI
Sbjct: 124 NCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVKNVI 183
Query: 625 IWGNHSSTQFPDASNAVAIVGGAQK 699
IWGNHSSTQ+PD ++A +K
Sbjct: 184 IWGNHSSTQYPDVNHATVKTSVGEK 208
>At1g04410.1 68414.m00432 malate dehydrogenase, cytosolic, putative
strong similarity to malate dehydrogenase from
Mesembryanthemum crystallinum [SP|O24047], Medicago
sativa [SP|O48905], Prunus persica [GI:15982948];
contains InterPro entry IPR001236: Lactate/malate
dehydrogenase
Length = 332
Score = 235 bits (575), Expect = 2e-62
Identities = 113/205 (55%), Positives = 143/205 (69%)
Frame = +1
Query: 85 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 264
EP+RV+VTGAAGQI Y+L+ IA G + G QPV LH+LDI P L GV MEL D A
Sbjct: 4 EPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELIDAAF 63
Query: 265 PLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVARK 444
PLL GV+ T + E V A +VG PRKEGMERKD+++ NV I+K Q AL+K A
Sbjct: 64 PLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKHAAP 123
Query: 445 DVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVI 624
+ KVLVV NPANTNALI ++APSIP++N + +TRLD NRA Q++ ++ VPV DVK VI
Sbjct: 124 NCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVKNVI 183
Query: 625 IWGNHSSTQFPDASNAVAIVGGAQK 699
IWGNHSS+Q+PD ++A +K
Sbjct: 184 IWGNHSSSQYPDVNHAKVQTSSGEK 208
>At5g58330.2 68418.m07304 malate dehydrogenase [NADP], chloroplast,
putative strong similiarity to chloroplast
NADP-dependent malate dehydrogenase (EC 1.1.1.82)
SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
{Flaveria bidentis}, [Flaveria trinervia] GI:726334,
SP|P17606I {Sorghum bicolor}; contains InterPro entry
IPR001236: Lactate/malate dehydrogenase
Length = 442
Score = 215 bits (526), Expect = 2e-56
Identities = 111/194 (57%), Positives = 133/194 (68%)
Frame = +1
Query: 91 IRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPL 270
I + V+GAAG I+ LL+++ASG VFGP QP+ L LL + LEGV MEL D PL
Sbjct: 99 INIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPL 158
Query: 271 LAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVARKDV 450
L V +P E F+DV A L+GA PR GMER DLL N +IF EQG+AL+K A +V
Sbjct: 159 LREVDIGTDPNEVFQDVEWAILIGAKPRGPGMERADLLDINGQIFAEQGKALNKAASPNV 218
Query: 451 KVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVIIW 630
KVLVVGNP NTNALIC K AP+IP +NF A+TRLD+NRA+ QLA K GV V + IW
Sbjct: 219 KVLVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 278
Query: 631 GNHSSTQFPDASNA 672
GNHS+TQ PD NA
Sbjct: 279 GNHSTTQVPDFLNA 292
>At5g58330.1 68418.m07303 malate dehydrogenase [NADP], chloroplast,
putative strong similiarity to chloroplast
NADP-dependent malate dehydrogenase (EC 1.1.1.82)
SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
{Flaveria bidentis}, [Flaveria trinervia] GI:726334,
SP|P17606I {Sorghum bicolor}; contains InterPro entry
IPR001236: Lactate/malate dehydrogenase
Length = 443
Score = 215 bits (526), Expect = 2e-56
Identities = 111/194 (57%), Positives = 133/194 (68%)
Frame = +1
Query: 91 IRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPL 270
I + V+GAAG I+ LL+++ASG VFGP QP+ L LL + LEGV MEL D PL
Sbjct: 100 INIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPL 159
Query: 271 LAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVARKDV 450
L V +P E F+DV A L+GA PR GMER DLL N +IF EQG+AL+K A +V
Sbjct: 160 LREVDIGTDPNEVFQDVEWAILIGAKPRGPGMERADLLDINGQIFAEQGKALNKAASPNV 219
Query: 451 KVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVIIW 630
KVLVVGNP NTNALIC K AP+IP +NF A+TRLD+NRA+ QLA K GV V + IW
Sbjct: 220 KVLVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 279
Query: 631 GNHSSTQFPDASNA 672
GNHS+TQ PD NA
Sbjct: 280 GNHSTTQVPDFLNA 293
>At5g58330.3 68418.m07302 malate dehydrogenase [NADP], chloroplast,
putative strong similiarity to chloroplast
NADP-dependent malate dehydrogenase (EC 1.1.1.82)
SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
{Flaveria bidentis}, [Flaveria trinervia] GI:726334,
SP|P17606I {Sorghum bicolor}; contains InterPro entry
IPR001236: Lactate/malate dehydrogenase
Length = 334
Score = 202 bits (494), Expect = 1e-52
Identities = 105/183 (57%), Positives = 125/183 (68%)
Frame = +1
Query: 124 IAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPLLAGVLPTANPE 303
I+ LL+++ASG VFGP QP+ L LL + LEGV MEL D PLL V +P
Sbjct: 2 ISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPLLREVDIGTDPN 61
Query: 304 EAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVARKDVKVLVVGNPANT 483
E F+DV A L+GA PR GMER DLL N +IF EQG+AL+K A +VKVLVVGNP NT
Sbjct: 62 EVFQDVEWAILIGAKPRGPGMERADLLDINGQIFAEQGKALNKAASPNVKVLVVGNPCNT 121
Query: 484 NALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVIIWGNHSSTQFPDA 663
NALIC K AP+IP +NF A+TRLD+NRA+ QLA K GV V + IWGNHS+TQ PD
Sbjct: 122 NALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDF 181
Query: 664 SNA 672
NA
Sbjct: 182 LNA 184
>At3g47520.1 68416.m05168 malate dehydrogenase [NAD], chloroplast
(MDH) identical to chloroplast NAD-malate dehydrogenase
[Arabidopsis thaliana] GI:3256066; contains InterPro
entry IPR001236: Lactate/malate dehydrogenase; contains
Pfam profiles PF00056: lactate/malate dehydrogenase, NAD
binding domain and PF02866: lactate/malate
dehydrogenase, alpha/beta C-terminal domain
Length = 403
Score = 57.6 bits (133), Expect = 7e-09
Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 7/205 (3%)
Frame = +1
Query: 64 YGNIKMAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVM 243
YG K+ +V V GAAG I L I + LHL DIA + +GV
Sbjct: 75 YG-FKINASYKVAVLGAAGGIGQPLSLLIKMSPLVST-----LHLYDIANV----KGVAA 124
Query: 244 ELADCALPLLAGVLPTANPEE---AFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQ 414
+L+ C P + V P E KDV + +PRK GM R DL N I K
Sbjct: 125 DLSHCNTP--SQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTL 182
Query: 415 GQALDKVARKDVKVLVVGNPANTN----ALICSKYAPSIPKENFTAMTRLDQNRAQSQLA 582
+A+ + + + ++ NP N+ A + K PK+ F +T LD RA + ++
Sbjct: 183 VEAVAENC-PNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLF-GVTTLDVVRANTFVS 240
Query: 583 AKIGVPVKDVKRVIIWGNHSSTQFP 657
K + + DV +I G+ T P
Sbjct: 241 QKKNLKLIDVDVPVIGGHAGITILP 265
>At2g22780.1 68415.m02702 malate dehydrogenase, glyoxysomal,
putative strong similarity to glyoxysomal malate
dehydrogenase (EC 1.1.1.37) SP|P19446 {Citrullus
lanatus}, SP|P46488 {Cucumis sativus}, [Medicago sativa]
GI:2827078, SP|Q42972 {Oryza sativa}, SP|Q9ZP05
{Arabidopsis thaliana}, SP|P37228 {Glycine max};
contains InterPro entry IPR001236: Lactate/malate
dehydrogenase
Length = 354
Score = 57.2 bits (132), Expect = 1e-08
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 3/191 (1%)
Frame = +1
Query: 94 RVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPLL 273
+V + GAAG I L + + LHL D+A GV + D + ++
Sbjct: 44 KVAILGAAGGIGQPLAMLMKMNPLVS-----VLHLYDVANAPGVTADI--SHMDTSA-VV 95
Query: 274 AGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVARKDVK 453
G L EEA + + +PRK GM R DL N I + +A+ K K +
Sbjct: 96 RGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAI- 154
Query: 454 VLVVGNPANTNALICS---KYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVI 624
V ++ NP N+ I + K A + + +T LD RA + +A + + ++V+ +
Sbjct: 155 VNIISNPVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMSLDPREVEVPV 214
Query: 625 IWGNHSSTQFP 657
+ G+ T P
Sbjct: 215 VGGHAGVTILP 225
>At3g03580.1 68416.m00361 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 882
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 702 RFLSTSNNSYSIRSIREL--G**MVSPDDYSLNIFNRYSNFSSKLGLSPVLIETSHGSEI 529
R LS+S+N +R I L + S D +S + ++YS+F V S +
Sbjct: 12 RALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNV 71
Query: 528 FFWNRWSILRTY 493
+ WN SI+R +
Sbjct: 72 YLWN--SIIRAF 81
>At3g19170.1 68416.m02434 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 334 LVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVARKDVKVLV 462
L+G + +R+++L +++ FK+ QA+D V K V V V
Sbjct: 1015 LLGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAV 1057
>At1g49630.3 68414.m05566 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 334 LVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVARKDVKVLV 462
L+ + + R+++L+ +++ FKE +A+D V+ K V V V
Sbjct: 1014 LLNVTDEERQIRREEILSTSLKDFKEFAEAIDSVSDKGVAVAV 1056
>At1g49630.2 68414.m05565 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 334 LVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVARKDVKVLV 462
L+ + + R+++L+ +++ FKE +A+D V+ K V V V
Sbjct: 1014 LLNVTDEERQIRREEILSTSLKDFKEFAEAIDSVSDKGVAVAV 1056
>At1g49630.1 68414.m05564 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 334 LVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVARKDVKVLV 462
L+ + + R+++L+ +++ FKE +A+D V+ K V V V
Sbjct: 1014 LLNVTDEERQIRREEILSTSLKDFKEFAEAIDSVSDKGVAVAV 1056
>At5g55960.1 68418.m06979 expressed protein
Length = 648
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +1
Query: 448 VKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDV 612
+K V+G+P NT+ + PS E ++ +NR SQ+ +++ V +++
Sbjct: 344 IKHFVIGHPQNTSTPSTALITPSPYTEKLMSLRTRVKNREWSQIYSEVDVIFREL 398
>At5g25350.1 68418.m03007 F-box family protein contains Pfam
PF00646: F-box domain and Pfam PF00560: Leucine Rich
Repeat (6 copies); similar to F-box protein FBL6
(GI:4432860) [Homo sapiens]
Length = 623
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 114 CRTNCILTSLSNCVWSSFWTSATCLPPPS*YCAYDGCT*RCCHGVG 251
C + SL+NC+ S + S + LP PS + + RCC G G
Sbjct: 402 CGSKLKAFSLANCLGISDFNSESSLPSPS-CSSLRSLSIRCCPGFG 446
>At2g23160.1 68415.m02767 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 395
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = -1
Query: 452 FTSLRATLSKAWPCSLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAVGRTP 276
FT L T S PC L SF S+P + P K+++ S+ AS+ F V P
Sbjct: 43 FTELFLTRSSPKPCILFATVADGVWSFFSLPQY----PYEKSSSASVAASAKFHVKFPP 97
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/83 (27%), Positives = 30/83 (36%)
Frame = -1
Query: 467 PTTRTFTSLRATLSKAWPCSLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAV 288
P T T S T S + P + + + A T AA + SSG A
Sbjct: 159 PATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAARATTSTAAPRTTTTSSGSAR 218
Query: 287 GRTPAKSGRAQSANSMTTPSSTP 219
TP +S S+ S P S P
Sbjct: 219 SATPTRSNPRPSSASSKKPVSRP 241
>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
DNA repair protein (rad1); almost identical to 5' repair
endonuclease (GI:8926611) [Arabidopsis thaliana]
Length = 956
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +1
Query: 442 KDVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRV 621
++++V NP + Y S + F A R + +S + K + + +
Sbjct: 631 RELEVYKAENPLRKLKVYFIFYDESTEVQKFEASIRRENEAFESLIRQKSSMIIPVDQDG 690
Query: 622 IIWGNHSSTQFPDAS--NAVAIVGGAQK 699
+ G++SST+FP +S N++ G +K
Sbjct: 691 LCMGSNSSTEFPASSTQNSLTRKAGGRK 718
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,061
Number of Sequences: 28952
Number of extensions: 325423
Number of successful extensions: 936
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -