Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6c17
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    34   0.086
U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neur...    31   1.1  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    29   3.2  
AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical ...    28   5.7  
AC024759-3|AAK68433.1|  355|Caenorhabditis elegans Hypothetical ...    28   5.7  
AC024759-2|AAM97964.1|  376|Caenorhabditis elegans Hypothetical ...    28   5.7  
AC024759-1|AAK73907.1|  376|Caenorhabditis elegans Hypothetical ...    28   5.7  
AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical ...    28   7.5  

>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 34.3 bits (75), Expect = 0.086
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +1

Query: 190 MYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALE 309
           M  S+L+ L+P +P  +K+SK+E+++  I YI  L + L+
Sbjct: 50  MAFSQLRALLPTLPVEKKLSKIEILRFSIAYISFLDNLLQ 89


>U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neuro d
           homolog protein1 protein.
          Length = 192

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +1

Query: 139 ASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALENH 315
           A+GR +    G N  + M    L++ +P   +++K+SK+E ++   +YI  LQ  L+ +
Sbjct: 24  ANGRERARMHGLNNALDM----LREYIPITTQHQKLSKIETLRLARNYIDALQRMLQTN 78


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 369  SVAAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRKTK 491
            SV++A  S +   P P   HH   +T H  +  S+ T  +K
Sbjct: 1128 SVSSASSSNDVGSPHPLPLHHEHPLTSHDSSAASSSTAPSK 1168


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 369  SVAAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRKTK 491
            SV++A  S +   P P   HH   +T H  +  S+ T  +K
Sbjct: 1128 SVSSASSSNDVGSPHPLPLHHEHPLTSHDSSAASSSTAPSK 1168


>AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical
           protein C11D9.1 protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 387 PSEETARPSPYAQHHPPQ-ITLHTRTQKSNGTRKTKP 494
           PS++  +P    Q+HPP  +T H  T   + T  TKP
Sbjct: 43  PSQQI-QPQQQQQYHPPDHVTTHNGTTTFHTTNPTKP 78


>AC024759-3|AAK68433.1|  355|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3a protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -2

Query: 646 DLHWN*SSEA---SVLPSVWSLPWQRWPLRGIFININHK 539
           +L+W  SSE        ++W LP Q W  RG+F + NH+
Sbjct: 191 ELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLF-DRNHR 228


>AC024759-2|AAM97964.1|  376|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3c protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -2

Query: 646 DLHWN*SSEA---SVLPSVWSLPWQRWPLRGIFININHK 539
           +L+W  SSE        ++W LP Q W  RG+F + NH+
Sbjct: 212 ELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLF-DRNHR 249


>AC024759-1|AAK73907.1|  376|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3b protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -2

Query: 646 DLHWN*SSEA---SVLPSVWSLPWQRWPLRGIFININHK 539
           +L+W  SSE        ++W LP Q W  RG+F + NH+
Sbjct: 212 ELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLF-DRNHR 249


>AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical
           protein Y116A8C.11 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 244 ISKLEVIQHVID-YICDLQSALENHPAVGQFD 336
           +S+LEV +  +D  + DLQS LE +P + +FD
Sbjct: 209 LSQLEVQKRKLDKQLIDLQSKLERNPELVEFD 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,237
Number of Sequences: 27780
Number of extensions: 292699
Number of successful extensions: 906
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)