Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6c07
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    27   1.7  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   5.2  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   5.2  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   6.9  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   6.9  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.1  

>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 1/162 (0%)
 Frame = +2

Query: 80  EKYLYIKENATVEPVLAFYVIPSVLTKLASQNLSLDKACRVNKNYGEEICDALLNREGTK 259
           EK L +K +  + P++ F  + + L +    N ++         YGE + +  ++     
Sbjct: 50  EKKLLLKMDLVISPIIGFLYLMAFLDRSNIGNAAVAGMTEALSLYGERL-NVAVSIFYVL 108

Query: 260 YLKEELDIQELIAGIETWKNVLLTAMP-SFLILFLGAWSDRTGKRKMCILLPIIGELLAC 436
           Y+  E     L+  I+  + +   +   S  +LF G  S   G   +     I+G L  C
Sbjct: 109 YILVETPSVVLVKRIKASRMLAFISFAWSMTVLFSGFMSSYGG---LIATRLILGLLEGC 165

Query: 437 ISNLVNTYFFYELPVEVMAFFEAFLPAVTGGWVATYMGVFSY 562
           +   +N Y       +      ++L A + G    + G+F+Y
Sbjct: 166 LFPALNLYLTTHYTRKEQCQRLSYLFA-SAGLAGAFGGLFAY 206


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 8   ISFPTKMAELEPLKAEVPDKKTLKEK---YLYIKENATVEPVLAFYVIPSVLTKLASQN 175
           IS+   M+ L P      +   L+ K   YLY+K  A+V+P  A   +  +L  + S N
Sbjct: 42  ISYGYDMSSLFPSVISSMESNNLELKKLCYLYLKIYASVKPTEAKRAVKLILNDIYSSN 100


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 333 AVNNTFFHVSIPA--ISSWMSNSSFKYFVPSLFRRASQISSP*FLL 202
           A  +T  HVS+ A   SS+  NSS   F+  LF+  S   S  F L
Sbjct: 201 AAESTNSHVSLDASNFSSYAENSSKFLFLQELFKNLSPSYSKTFFL 246


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 437 YMREALLLLVREYTFFSFPFCHSTLREKVLRNLASLLIIHFSMFLY 300
           Y+R ++L+     T FSF    S +       L +L  I +S FLY
Sbjct: 634 YLRYSILMGSIGITLFSFAKTRSGILGAASFTLVALFAIFYSTFLY 679


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 478 GRSHGVF*SFLTGCYWWVGCYLYGSVQLYQ*CV 576
           G+  G    FL   YWWV  +LY +  L   C+
Sbjct: 188 GKESGTISQFLPEGYWWV--FLYTTCVLAMCCI 218


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 143  PSVLTK-LASQNLSLDKACRVNKNYGEEIC 229
            P+VL+K  AS N S     R+ KN+  ++C
Sbjct: 1410 PTVLSKKAASLNYSQSLFVRIQKNFSNQMC 1439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,011
Number of Sequences: 5004
Number of extensions: 51534
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)