Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6c07
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70753-12|CAA94761.2| 585|Caenorhabditis elegans Hypothetical p... 41 6e-04
AF125971-1|AAD14769.2| 469|Caenorhabditis elegans Hypothetical ... 40 0.002
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p... 33 0.17
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p... 33 0.17
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 33 0.17
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 33 0.17
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B... 33 0.17
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 33 0.17
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 33 0.17
AL110477-11|CAB54323.1| 489|Caenorhabditis elegans Hypothetical... 32 0.30
Z81116-5|CAB03298.1| 414|Caenorhabditis elegans Hypothetical pr... 28 6.4
AY204186-1|AAO39190.1| 421|Caenorhabditis elegans nuclear recep... 28 6.4
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 8.5
U64862-6|AAB52623.3| 560|Caenorhabditis elegans Temporarily ass... 27 8.5
AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical... 27 8.5
>Z70753-12|CAA94761.2| 585|Caenorhabditis elegans Hypothetical
protein F40F9.5 protein.
Length = 585
Score = 41.1 bits (92), Expect = 6e-04
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Frame = +2
Query: 227 CDALLNREGTKYLKEELDIQELIAGIETWKNVLLTAMPSFLILFLGAWSDRTGKRKMCIL 406
C ++ + GT L++ D+++ IA + + ++ T + +G WSDR G RK +L
Sbjct: 107 CASIASSNGT--LQD--DVEKDIANTKIYLQIMGTIPTLIVSPLIGNWSDRNG-RKSPLL 161
Query: 407 LPIIGELLACISNLVNTYFFYELPVEVMAFFEAFLPAVTGGWVATYMGVFSYISD----- 571
+ G + L T + + V F F+ + GG AT+ + ++D
Sbjct: 162 FSLFGLFINNFILLCATLTYETVNVYYWFFISEFMLGMFGGGAATFSTSLAIVTDDCRHK 221
Query: 572 -ASSEETRTFRVGIANLCLTAG 634
T FRVG+A+ + G
Sbjct: 222 LKPGSSTVPFRVGLASFVQSIG 243
>AF125971-1|AAD14769.2| 469|Caenorhabditis elegans Hypothetical
protein Y4C6B.5 protein.
Length = 469
Score = 39.5 bits (88), Expect = 0.002
Identities = 41/164 (25%), Positives = 70/164 (42%)
Frame = +2
Query: 113 VEPVLAFYVIPSVLTKLASQNLSLDKACRVNKNYGEEICDALLNREGTKYLKEELDIQEL 292
+E L Y++ S L QNL +K C + E C R + Y ++ DIQ
Sbjct: 10 MEIPLFLYMLGSYLNYPVFQNLIYEKECLIKYQQNETFC-----RNVSAYY-DDKDIQAA 63
Query: 293 IAGIETWKNVLLTAMPSFLILFLGAWSDRTGKRKMCILLPIIGELLACISNLVNTYFFYE 472
++ L L LGA +D K+ +++P IG +L I+ + +YF +
Sbjct: 64 ANHFYFISSLTLLCPSLVTTLLLGAATD-YWSIKIPLIIPYIGCILGTINYVFQSYFIH- 121
Query: 473 LPVEVMAFFEAFLPAVTGGWVATYMGVFSYISDASSEETRTFRV 604
V + +A L + GG++A +Y S R++R+
Sbjct: 122 TSVYFLLISDA-LFGLCGGFIAIISTTLTYGVKTSMLRYRSYRI 164
>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 2 VTISFPTKMAELEPLKAEVPDKKTLKEKYLYIKENATVEPVLAFYVIPSVLTKLASQNLS 181
VTI K L P + ++ L +Y Y+K N+ EP++ + P +L + +Q LS
Sbjct: 834 VTIDGVIKQRRLPPQMENLAERIALNSRY-YLKNNSRSEPLVPDELAPELLKEAQTQLLS 892
Query: 182 LD 187
L+
Sbjct: 893 LN 894
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
T14G10.2a protein.
Length = 1470
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 2 VTISFPTKMAELEPLKAEVPDKKTLKEKYLYIKENATVEPVLAFYVIPSVLTKLASQNLS 181
VTI K L P + ++ L +Y Y+K N+ EP++ + P +L + +Q LS
Sbjct: 834 VTIDGVIKQRRLPPQMENLAERIALNSRY-YLKNNSRSEPLVPDELAPELLKEAQTQLLS 892
Query: 182 LD 187
L+
Sbjct: 893 LN 894
>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 2 VTISFPTKMAELEPLKAEVPDKKTLKEKYLYIKENATVEPVLAFYVIPSVLTKLASQNLS 181
VTI K L P + ++ L +Y Y+K N+ EP++ + P +L + +Q LS
Sbjct: 834 VTIDGVIKQRRLPPQMENLAERIALNSRY-YLKNNSRSEPLVPDELAPELLKEAQTQLLS 892
Query: 182 LD 187
L+
Sbjct: 893 LN 894
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 2 VTISFPTKMAELEPLKAEVPDKKTLKEKYLYIKENATVEPVLAFYVIPSVLTKLASQNLS 181
VTI K L P + ++ L +Y Y+K N+ EP++ + P +L + +Q LS
Sbjct: 834 VTIDGVIKQRRLPPQMENLAERIALNSRY-YLKNNSRSEPLVPDELAPELLKEAQTQLLS 892
Query: 182 LD 187
L+
Sbjct: 893 LN 894
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 2 VTISFPTKMAELEPLKAEVPDKKTLKEKYLYIKENATVEPVLAFYVIPSVLTKLASQNLS 181
VTI K L P + ++ L +Y Y+K N+ EP++ + P +L + +Q LS
Sbjct: 711 VTIDGVIKQRRLPPQMENLAERIALNSRY-YLKNNSRSEPLVPDELAPELLKEAQTQLLS 769
Query: 182 LD 187
L+
Sbjct: 770 LN 771
>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
protein.
Length = 1311
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 2 VTISFPTKMAELEPLKAEVPDKKTLKEKYLYIKENATVEPVLAFYVIPSVLTKLASQNLS 181
VTI K L P + ++ L +Y Y+K N+ EP++ + P +L + +Q LS
Sbjct: 834 VTIDGVIKQRRLPPQMENLAERIALNSRY-YLKNNSRSEPLVPDELAPELLKEAQTQLLS 892
Query: 182 LD 187
L+
Sbjct: 893 LN 894
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 2 VTISFPTKMAELEPLKAEVPDKKTLKEKYLYIKENATVEPVLAFYVIPSVLTKLASQNLS 181
VTI K L P + ++ L +Y Y+K N+ EP++ + P +L + +Q LS
Sbjct: 834 VTIDGVIKQRRLPPQMENLAERIALNSRY-YLKNNSRSEPLVPDELAPELLKEAQTQLLS 892
Query: 182 LD 187
L+
Sbjct: 893 LN 894
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 2 VTISFPTKMAELEPLKAEVPDKKTLKEKYLYIKENATVEPVLAFYVIPSVLTKLASQNLS 181
VTI K L P + ++ L +Y Y+K N+ EP++ + P +L + +Q LS
Sbjct: 834 VTIDGVIKQRRLPPQMENLAERIALNSRY-YLKNNSRSEPLVPDELAPELLKEAQTQLLS 892
Query: 182 LD 187
L+
Sbjct: 893 LN 894
>AL110477-11|CAB54323.1| 489|Caenorhabditis elegans Hypothetical
protein Y113G7B.16 protein.
Length = 489
Score = 32.3 bits (70), Expect = 0.30
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 77 KEKYLYIKENATVEPVLAFYVIPSVLTKLASQNLSLDKACRVNKNYGEEICDALLNREGT 256
K+ +Y+ E A + LA Y IP++ +++ + S+ A R + YG++ +G
Sbjct: 103 KKDNVYLAEAAQILQRLAQYEIPALRKQISKMDQSVTDAIRKHSEYGKQA------EDGR 156
Query: 257 KYLKEELDIQELIAGIETWKNVLLTA--MPSF 346
K ++E+ +L G+ K +L A +P+F
Sbjct: 157 KQFEKEISRMQL-KGVHLRKELLELAADLPAF 187
>Z81116-5|CAB03298.1| 414|Caenorhabditis elegans Hypothetical
protein T06C12.6 protein.
Length = 414
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 215 GEEICDALLNREGTKYLKEEL 277
GE +CD L N + YLKEE+
Sbjct: 344 GERVCDELANNLHSYYLKEEM 364
>AY204186-1|AAO39190.1| 421|Caenorhabditis elegans nuclear receptor
NHR-102 protein.
Length = 421
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 215 GEEICDALLNREGTKYLKEEL 277
GE +CD L N + YLKEE+
Sbjct: 351 GERVCDELANNLHSYYLKEEM 371
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 613 GDAHSKCSSFLTGRITDIAEHSHISSNP 530
GD ++KC T R T+ + H++ + NP
Sbjct: 1189 GDGYTKCDVIETPRCTNCSIHAYCAQNP 1216
>U64862-6|AAB52623.3| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 226 protein.
Length = 560
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 310 MEKCI-INSDAKFL-NTFSRSVE*QNGKEKNVYSLTNNRRASRMYQQFGQH 456
++KC +N+D + L R + +GK+K++ NNR + R + +H
Sbjct: 81 LKKCPDLNTDERMLIRIVGRYKDIHSGKDKSIDGFYNNRESKRSVMEIWEH 131
>AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical
protein Y48B6A.12 protein.
Length = 620
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 206 KNYGEEICDALLNREGTKYLKEELDIQE----LIAGIETWKNVLLTAMPSFLILFLGAWS 373
+++G + LL+R +Y DIQ ++AG+ + + I+FLGA
Sbjct: 283 EDFGNQNAYRLLDRYKGEYCMFNDDIQGTAAVVVAGLLASTRITKKKLSQERIVFLGAGG 342
Query: 374 DRTGKRKMCI 403
TG +MC+
Sbjct: 343 AATGVAEMCV 352
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,696,587
Number of Sequences: 27780
Number of extensions: 272721
Number of successful extensions: 929
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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