Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6c07
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.47 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.47 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.47 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.47 
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    25   0.81 
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    24   1.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    24   1.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    24   1.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    24   1.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    24   1.4  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   2.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.5  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   3.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   4.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.6  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 452 NTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           N  +  ++P+ V  ++  FLP   G W++
Sbjct: 111 NINYIEQIPIPVPVYYGNFLPRPMGPWIS 139


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 452 NTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           N  +  ++P+ V  ++  FLP   G W++
Sbjct: 111 NINYIEQIPIPVPVYYGNFLPRPMGPWIS 139


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 452 NTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           N  +  ++P+ V  ++  FLP   G W++
Sbjct: 111 NINYIEQIPIPVPVYYGNFLPRPMGPWIS 139


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 452 NTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           N  +  ++P+ V  ++  FLP   G W++
Sbjct: 111 NINYIEQIPIPVPVYYGNFLPRPMGPWIS 139


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 417 IIGKRIHIFLFPVLSLHAPRKSIKKLGIA 331
           +IGK+I   L  VL+ H  R + +++GIA
Sbjct: 48  VIGKKIKELLPEVLNNHCNRCTSRQIGIA 76


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 452 NTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           N  +  ++PV V  ++  F P   G W++
Sbjct: 105 NINYIEQIPVPVPVYYGNFPPRPMGSWIS 133


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 452 NTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           N  +  ++PV V  ++  F P   G W++
Sbjct: 105 NINYIEQIPVPVPVYYGNFPPRPMGSWIS 133


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 452 NTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           N  +  ++PV V  ++  F P   G W++
Sbjct: 105 NINYIEQIPVPVPVYYGNFPPRPMGSWIS 133


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 452 NTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           N  +  ++PV V  ++  F P   G W++
Sbjct: 105 NINYIEQIPVPVPVYYGNFPPRPMGSWIS 133


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 452 NTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           N  +  ++PV V  ++  F P   G W++
Sbjct: 105 NINYIEQIPVPVPVYYGNFPPRPMGSWIS 133


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +2

Query: 434 CISNLVNTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           C     N  +  ++P+ V  ++  F P   G W++
Sbjct: 104 CKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPWIS 138


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +2

Query: 434 CISNLVNTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           C     N  +  ++P+ V  ++  F P   G W++
Sbjct: 109 CKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPWIS 143


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +2

Query: 434 CISNLVNTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           C     N  +  ++P+ V  ++  F P   G W++
Sbjct: 109 CKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPWIS 143


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +2

Query: 434 CISNLVNTYFFYELPVEVMAFFEAFLPAVTGGWVA 538
           C     N  +  ++P+ V  ++  F P   G W++
Sbjct: 109 CKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPWIS 143


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 473 LPVEVMAFFEAFLPAVTGGWVA 538
           +P+ V  ++  FLP   G W++
Sbjct: 115 VPIPVPVYYGNFLPRPMGPWIS 136


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 410 VREYTFFSFPFCHSTLR 360
           +R YT   FP+ H TL+
Sbjct: 455 IRTYTQQQFPYVHDTLQ 471


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 470 ELPVEVMAFFEAFLPAVTGGWVA 538
           ++PV V  ++  F P   G W++
Sbjct: 111 QIPVPVPVYYGNFPPRPMGSWIS 133


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 470 ELPVEVMAFFEAFLPAVTGGWVATYMGV--FSYISDAS 577
           ++PV V  ++  F P   G W++    +  F YI  ++
Sbjct: 126 QIPVPVPVYYGNFPPRPMGPWISMQEQIPRFRYIGPST 163


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 470 ELPVEVMAFFEAFLPAVTGGWVATYMGV--FSYISDAS 577
           ++PV V  ++  F P   G W++    +  F YI  ++
Sbjct: 126 QIPVPVPVYYGNFPPRPMGPWISMQEQIPRFRYIGPST 163


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 290 LIAGIETWKNVLLTAMP 340
           L  GIE W+N L   +P
Sbjct: 68  LPVGIEIWRNKLFVTVP 84


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 306 KHGKMYY*QRC 338
           +HG +YY QRC
Sbjct: 11  EHGGLYYHQRC 21


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 470 ELPVEVMAFFEAFLPAVTGGWVA 538
           ++PV V  ++  F P   G W++
Sbjct: 126 QIPVPVPVYYGNFPPRPMGPWIS 148


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 470 ELPVEVMAFFEAFLPAVTGGWVA 538
           ++PV V  ++  F P   G W++
Sbjct: 351 QIPVPVPVYYGNFPPRPMGPWIS 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,471
Number of Sequences: 438
Number of extensions: 3493
Number of successful extensions: 35
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)