Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6c01
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141...    74   8e-14
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310...    62   3e-10
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266...    56   2e-08
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367...    36   0.021
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768...    31   1.0  
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457...    30   1.8  
05_03_0411 - 13622241-13622591,13622838-13623476,13624031-136241...    30   1.8  
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010...    29   3.1  
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22...    29   3.1  
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246...    28   5.5  
12_01_0061 + 514798-515967                                             27   9.6  
06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148...    27   9.6  
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167...    27   9.6  
01_06_1183 - 35176780-35177266,35179631-35181093                       27   9.6  
01_06_0555 - 30182818-30183169,30183268-30183674,30183804-301847...    27   9.6  

>05_01_0195 -
           1409820-1409966,1410304-1410360,1410774-1410828,
           1410902-1411002,1411051-1411205,1411395-1411459,
           1411545-1411595,1411817-1411893,1412153-1412262,
           1412355-1412403,1412528-1412572,1412689-1412813,
           1413087-1413228,1413336-1413446
          Length = 429

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
 Frame = +3

Query: 225 RETIRKLATEQISPLVKKMEDEHRI--DDGIRQMLFDNGLMGIETPVEYSGSGCNFLTMM 398
           +E++ K A E I+P    ++  +    D  + +++ D  L G+  P EY G G  ++   
Sbjct: 39  KESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAPEEYGGMGLGYMYHC 98

Query: 399 LVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSS 575
           + +EE+SR   +V      H+ L  +  ++ G+  QK KYL KL + E+ G+  ++EP+S
Sbjct: 99  IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNS 158

Query: 576 GSDAFALK 599
           GSD  ++K
Sbjct: 159 GSDVVSMK 166


>01_01_0413 -
           3107668-3107796,3107879-3107971,3108082-3108253,
           3108341-3108417,3108514-3108673,3108766-3108875,
           3109384-3109443,3109545-3109618,3109748-3109871,
           3110795-3110872,3111169-3111275,3112572-3112673,
           3112800-3112815
          Length = 433

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
 Frame = +3

Query: 198 MLTEDELAMRETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFDNGLMGIETPVEYSGSG 377
           +LT +E ++R+ +R +  ++I+P++    ++          L   G+ G  T   Y   G
Sbjct: 49  LLTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGVAG-GTIKGYGCPG 107

Query: 378 CNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCTEYA-GSF 554
            +     + + E++RVD + + ++ +H++L        G+E QK+KYL  L    A G +
Sbjct: 108 LSITASAITMAEIARVDASCSTFILVHSSLAMVTIALCGSEVQKQKYLPSLAQLTAVGCW 167

Query: 555 CLTEPSSGSDAFAL 596
            LTEP+ GSDA +L
Sbjct: 168 ALTEPNHGSDASSL 181


>06_02_0283 +
           13726047-13726090,13726160-13726266,13726515-13726621,
           13726735-13726812,13734948-13735071,13735585-13735658,
           13735742-13735801,13737561-13737670,13737806-13737965,
           13738218-13738360,13738461-13738605,13738727-13738819,
           13740070-13740186
          Length = 453

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 1/140 (0%)
 Frame = +3

Query: 198 MLTEDELAMRETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFDNGLMGIETPVEYSGSG 377
           +LTE+E  ++  +R+    +++P++ K  ++      +   +   G+ G  T   Y   G
Sbjct: 60  LLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGIAG-GTIKGYGCPG 118

Query: 378 CNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLC-TEYAGSF 554
            +     +   E++RVD ++A++  + + L      +LG+E QK+KYL  L   +    +
Sbjct: 119 LSGPACAMCFLEIARVDASIASFCLVQSCLAMVSIAQLGSEAQKEKYLRPLSKMQKVCVY 178

Query: 555 CLTEPSSGSDAFALKNCCPK 614
            L+EP+ GSDA +L     K
Sbjct: 179 ALSEPNHGSDASSLNTTARK 198


>05_01_0464 -
           3670397-3670525,3671152-3671244,3671366-3671537,
           3671626-3671702,3671819-3671978,3672104-3672213,
           3672321-3672380,3672492-3672629,3672922-3672999,
           3673227-3673333,3674506-3674598,3674708-3674723
          Length = 410

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +3

Query: 492 GTEEQKKKYLTKLCTEYA--GSFCLTEPSSGSDAFALKNCCPK 614
           G+E QK+KYL  L T++   G + LTEP  GSDA +L+    K
Sbjct: 123 GSEAQKQKYLPSL-TQFRTIGCWALTEPDYGSDASSLRTAATK 164


>10_04_0022 +
           7687383-7687670,7688479-7688556,7689456-7689535,
           7689876-7690095,7690444-7690677
          Length = 299

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
 Frame = +3

Query: 201 LTEDELAMR--ETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFD 329
           L E+ELA R  E+IRK   ++++    K E + R+++GI+Q LFD
Sbjct: 158 LLEEELARRVEESIRKNVEDRLNSEDIKNEIKRRVEEGIKQ-LFD 201


>11_04_0418 -
           17443989-17444082,17445153-17445406,17445709-17445783,
           17446156-17446377,17446789-17446941,17447031-17447167,
           17447615-17447933
          Length = 417

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +3

Query: 36  RFHS--ANANRIKMFPLRRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTE 209
           RFH    NANR+K+  +++ + ++ +EQ +    + + AK QM+A   +   R L    E
Sbjct: 200 RFHKNEQNANRLKVLEIQQKLSSEKIEQAK---ISHLAAKEQMEAAKVQREARKL----E 252

Query: 210 DELAMRETIRKLATEQISPLVKKMEDEHRI 299
            E  M ET  +L     S     M DE ++
Sbjct: 253 VEARMYETYNRLLAVDTS----LMSDEEKV 278


>05_03_0411 -
           13622241-13622591,13622838-13623476,13624031-13624177,
           13624364-13624486,13624609-13624784,13625168-13625444
          Length = 570

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 81  RRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTEDEL 218
           R ++GNK+ ++W ++   A   + ++K Y+TE  P        D+L
Sbjct: 232 RTILGNKLYQEWFNKRFNAAVFENELKWYATEPYPGKEDYTVADQL 277


>11_06_0340 -
           22500411-22500566,22500660-22500783,22500914-22501080,
           22501157-22501336,22501544-22502427,22502728-22502843,
           22503745-22504217
          Length = 699

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 402 VVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSSG 578
           V+E     D ++   + +  +L     + LGT++ + ++   +   +Y G F +TE   G
Sbjct: 138 VMEAAGGADISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFAMTELHHG 197

Query: 579 SDAFALK 599
           S+  AL+
Sbjct: 198 SNVQALQ 204


>06_01_0023 +
           227014-227166,227893-228001,228096-228157,228284-228493,
           228609-228696,228774-228936,229037-229235,229456-229653,
           229887-230018,230182-230302,230453-230563,230710-230779,
           230880-231063,231137-231346
          Length = 669

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 444 YVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSSGSDAFALK 599
           YVD+H  +        GTEEQ+KK+L      +  G +  TE   GS+   L+
Sbjct: 103 YVDLHWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNVQGLE 155


>06_03_1403 +
           29923503-29923821,29924269-29924405,29924495-29924647,
           29924690-29925280,29925523-29925597,29925901-29926169,
           29927238-29927331
          Length = 545

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 24/83 (28%), Positives = 41/83 (49%)
 Frame = +3

Query: 51  NANRIKMFPLRRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTEDELAMRE 230
           NANR+K+  +++ + ++ +EQ +    + + AK QM+A   +   R L    E E  M E
Sbjct: 330 NANRLKVLEIQQKLSSEKIEQTK---ISHLAAKEQMEAAKVQREARKL----EVEARMYE 382

Query: 231 TIRKLATEQISPLVKKMEDEHRI 299
           T  +L     S     M DE ++
Sbjct: 383 TYNRLLVVDTS----LMSDEEKV 401


>12_01_0061 + 514798-515967
          Length = 389

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 54  ANRIKMFPLRRVVGNKILEQWRSQATAAVG-AKTQMKAY 167
           +NR  ++ LRRV  N++L   R  A AA   ++ ++KAY
Sbjct: 14  SNRDGLYSLRRVPANRLLYPSRRAAEAATAKSEEEVKAY 52


>06_01_0191 +
           1478267-1478929,1480579-1480789,1482625-1482925,
           1483217-1483612,1483993-1484070,1484166-1484373
          Length = 618

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 187 RGVTSVLYAFI*VFAPTAAVAWDL-HCSKILLPTTRRNG 74
           RGV ++L        P  A A+D+ HCS+ L+P ++ NG
Sbjct: 255 RGVPAMLGIMATKRLPYPARAFDMAHCSRCLIPWSKYNG 293


>05_05_0362 +
           24415257-24415481,24415585-24415835,24416659-24416755,
           24417272-24417820,24418029-24418482,24418747-24418860,
           24418940-24419023,24419499-24420067
          Length = 780

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = +3

Query: 24  AEAARFHSANANRIKMFPLRRVVG---NKILEQWRSQATAAVGAKTQMKAYSTEVTPRPL 194
           A+A    +ANA R+K  P RRVV    NK  ++ + Q   +VG +  M+ Y    T +  
Sbjct: 644 ADATEDDNANAERLKEMPQRRVVAVPRNKEEKEPKRQ-KKSVGVEGLMERYLDMRTKQ-- 700

Query: 195 TMLTEDELAM--RETIRKLATEQ 257
              TEDE     RE    LA E+
Sbjct: 701 ---TEDEAVQLAREKEAHLAREK 720


>01_06_1183 - 35176780-35177266,35179631-35181093
          Length = 649

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 78  LRRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRP 191
           L + +G++  E+W +   A VG     K      TPRP
Sbjct: 218 LEQEIGDRASEKWTASMIALVGLLRYAKCVLFSATPRP 255


>01_06_0555 -
           30182818-30183169,30183268-30183674,30183804-30184773,
           30184829-30184902,30184941-30185084,30185186-30185365,
           30185448-30185988,30186081-30186538,30187723-30187901,
           30187998-30188052,30188217-30188468
          Length = 1203

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 530 LHGICWQFLSHRAQLRIRCFCLEKLLPKKEG 622
           + G CW   S R  LRIR   L+ +L ++ G
Sbjct: 102 MEGYCWSRTSERQVLRIRYLYLQAILRQEVG 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,752,284
Number of Sequences: 37544
Number of extensions: 381428
Number of successful extensions: 1164
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)