Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6b23
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-2|AAP68930.1|  295|Caenorhabditis elegans Hypothetical pr...   111   5e-25
AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine re...    31   0.59 
U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81530-2|CAB04306.1|  359|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical...    28   7.3  
AF068713-1|AAC17794.1|  206|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    27   9.6  
U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U13646-2|AAP68930.1|  295|Caenorhabditis elegans Hypothetical
           protein ZK783.2 protein.
          Length = 295

 Score =  111 bits (267), Expect = 5e-25
 Identities = 63/173 (36%), Positives = 89/173 (51%), Gaps = 1/173 (0%)
 Frame = +1

Query: 154 DGTVRLRNPNIELMDQ-DILYHLALGSGSHDLVEMFGDVKFVCMGGTPKRMEQFAYTIMA 330
           +G V   N   ++ D+ D LYH   G  + D+  +FGD KFVC GG+P R + +A     
Sbjct: 7   NGNVEKPNKYFDIKDKRDFLYHFGFGVDTLDIPAVFGDTKFVCTGGSPGRFKLYAEWFAK 66

Query: 331 EIGHKLPCGTTLQDISHFSYRYSMYKVGPVLSISHGMGIPSVGILLHEVIKLMYHAKVRD 510
           E    +PC   L      S R+ +YK GPV  I+HGMG PS+ I+L E  KLM+HA V++
Sbjct: 67  EAN--IPCSENLSR----SDRFVIYKTGPVCWINHGMGTPSLSIMLVESFKLMHHAGVKN 120

Query: 511 PVFFRXXXXXXXXXXXXXXXXSDEAVDGALRNVLELTVLGKIVQRPAKLDRRL 669
           P F R                S EA++  L +     + GK ++RP +LD  L
Sbjct: 121 PTFIRLGTSGGVGVPPGTVVVSTEAMNAELGDTYVQIIAGKRIERPTQLDAAL 173


>AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 68 protein.
          Length = 284

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 47  ILSRSLKITRLSISANSVYTTL*CHSITTSYVTNTQMALSDCVTLTLNSWTKIFSTIW 220
           + S  + +T L +    VYT L  +     Y   TQ+A+ D  TL L +   + ST W
Sbjct: 179 VFSMIVVLTVLQLGKLVVYTVLAQNQSAQVYSRATQIAMLDSTTLILFNLVPVMSTFW 236


>U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical
           protein F31F7.2 protein.
          Length = 689

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 1/110 (0%)
 Frame = -1

Query: 561 TAFVAYTTTCSDSEEHRITDFRVVHQLYDFVKQDSD-RRYAHTVTYRKYRANFIHGVSVR 385
           TA +AY    S  EE+R    RV        KQ+       HT   ++      H   ++
Sbjct: 291 TALLAYAIY-SYHEENRRLRHRVTESERQLRKQNEYFTSQLHTEMQKQITYGEKHAEEMK 349

Query: 384 KMTDVLQCSSTRQLVPYLRHDCVCELFHAFRCSAHAHKLDVSKHLNKIMG 235
           K  D++Q    RQL    +     ++   F  + H H  D S+H  K  G
Sbjct: 350 KQQDMMQAQFDRQLDMAYQQGSKIQILPPFNQNPHFH--DHSEHTGKERG 397


>Z81530-2|CAB04306.1|  359|Caenorhabditis elegans Hypothetical
           protein F36D1.2 protein.
          Length = 359

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
 Frame = -1

Query: 324 DCVCELFHAFRCSAHAHKLD-------VSKHLNKIMGAAPKGQMVENILVHEFNVRVTQS 166
           DC  E  H  RCS   +K D       +  H    + A P G +VE I    F V+  + 
Sbjct: 85  DCDDECHHLGRCSFEKNKFDPIFISAIMRYHYMFFVLATPVGILVERIFATVF-VKDYEK 143

Query: 165 DSAIWVF 145
           +S  W+F
Sbjct: 144 ESRYWIF 150


>AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.1 protein.
          Length = 675

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +1

Query: 604 NVLELTVLGKIVQRPAKLDRRLVRELK 684
           N+L+L  L +I++ PAKL RRL++ L+
Sbjct: 632 NILDLDELFQIMKHPAKLSRRLLQILQ 658


>Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical
           protein C35C5.11 protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = -1

Query: 444 AHTVTYRKYRANFIHGVSVRKMTDVLQ--CSSTRQLVPYLRHDCVCELFHAFRCSAHAHK 271
           A TV      +N++H +S+   T  +Q   S    +   +  D +    H+    AH   
Sbjct: 15  AATVVVTVLISNYVHQLSMSSGTPTIQNTVSIANNIRQLINTDKIRSNLHSLTKKAHVAG 74

Query: 270 LDVSKHLNKIMGAAPKGQMVENILVHEFNVRVTQSD 163
            + +  + +I+      Q +EN+  +E+NV ++  D
Sbjct: 75  TENNLRVAEIIRDQMISQGLENVHFNEYNVLLSYPD 110


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
 Frame = -1

Query: 492  VHQLYDFVKQDSDRRYAHTVTYRKYRANFIHGVSVRKMTDVLQCSSTRQLVPYLRHDCVC 313
            +  ++D   ++  R  +     ++   N +HG     +   +     R ++ YL+ D + 
Sbjct: 2522 IRNIFDGFGENMIRTTSQVDEMKQMFRNHLHGKYSPLVQSHMYAPRQRIMMAYLKGDFMT 2581

Query: 312  ELFHAFRCSAHAHKLDVSKHLNKIMG-AAPKGQMVENILVHEFNV 181
              F+ +  S H   +D +   NKI+G    K +++  I +H+  +
Sbjct: 2582 IYFYNYHYSIHKEAVDCT---NKIVGFHNAKSRLLREIGLHKMGI 2623


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
 Frame = -1

Query: 492  VHQLYDFVKQDSDRRYAHTVTYRKYRANFIHGVSVRKMTDVLQCSSTRQLVPYLRHDCVC 313
            +  ++D   ++  R  +     ++   N +HG     +   +     R ++ YL+ D + 
Sbjct: 2522 IRNIFDGFGENMIRTTSQVDEMKQMFRNHLHGKYSPLVQSHMYAPRQRIMMAYLKGDFMT 2581

Query: 312  ELFHAFRCSAHAHKLDVSKHLNKIMG-AAPKGQMVENILVHEFNV 181
              F+ +  S H   +D +   NKI+G    K +++  I +H+  +
Sbjct: 2582 IYFYNYHYSIHKEAVDCT---NKIVGFHNAKSRLLREIGLHKMGI 2623


>AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical
           protein Y53F4B.25 protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -2

Query: 290 VPPMHTNLTSPNISTRSWEPLPR 222
           +PP+H + ++PN  T+ ++P+P+
Sbjct: 234 IPPLHPHQSTPNPLTQFFQPIPQ 256


>AF068713-1|AAC17794.1|  206|Caenorhabditis elegans Hypothetical
           protein T24A6.7 protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 354 TRQLVPYLRHDCVCELFHAFRCSAHAHKLDVSKHLN 247
           T+Q V + + DCV   F+    SA   + DV K++N
Sbjct: 12  TKQFVFFYKFDCVFSNFYPCEFSAQEFENDVEKNVN 47


>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 321 CVCELFHAFRCSAHAHKLDVSKHLNKIM 238
           C+C+  H F C A     DVS+ L KI+
Sbjct: 126 CICDQEHMFNC-AEKEAQDVSESLQKIL 152


>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
            protein ZK856.13 protein.
          Length = 1037

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 13   QKTVSSLHS-SIHSITFLKNHSSIHKCQQRLYHII 114
            +K +SS H   I  I F+K +S    CQQ +++ I
Sbjct: 925  KKDLSSRHLIGIRGIAFMKKYSKARACQQEVFYNI 959


>U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical
           protein T04G9.5 protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 549 AYTTTCSDSEEHRITDFRVVHQLYDFVKQDSDRRYAHTVTY 427
           A  T  +D+E H +T      + Y + +++ DRR+A   TY
Sbjct: 113 AQVTYYTDNENHHVTLTNTPGEGYIYRQREYDRRFAPKYTY 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,511,248
Number of Sequences: 27780
Number of extensions: 373209
Number of successful extensions: 963
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)