Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6b21
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   0.73 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   1.7  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    25   3.0  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   3.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   3.9  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   3.9  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    24   5.2  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    24   6.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    24   6.8  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    23   9.0  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 0.73
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 79  VRSRFHEEFHFYMITSYHRRKY 14
           V+SR+H+E H Y  T + +R Y
Sbjct: 867 VQSRWHDEEHHYYKTGFRKRVY 888


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +1

Query: 46  KNEILHGNGYEPIDNRPYIVNPPK--DYNPNG-NGYEPIDNGAYYVD 177
           + E  +GN      N       PK  DYN N  N Y PI N  Y+++
Sbjct: 93  RRETHYGNNRTYYKNSQGYRRKPKRDDYNNNRKNFYPPIQNSTYFIN 139


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 61  HGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGA 165
           HG G+   DN   ++ PP  +    NG +  D  A
Sbjct: 321 HGPGWRSGDNNKKVIVPPNFHQVKLNGSDGYDKDA 355


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 329 FFFKHYNMFIYLFR*HKFI*NFEI 258
           FF K Y+ F+++FR + FI +FE+
Sbjct: 188 FFLKQYHNFMFVFRDY-FIRDFEL 210


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -1

Query: 237  VINFLRYSLLPTASTRERGRVHVI 166
            ++NFL++S +PT S ++R  VH++
Sbjct: 1179 ILNFLKFSGIPTQS-KKRLEVHML 1201


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 326 FFKHYNMFIYLFR*HKFI*NFEIYC*YIISLL 231
           FF  YN FI+ F+   FI ++     Y+I +L
Sbjct: 470 FFNGYNAFIHGFKYRSFITSYIGIAAYVIMIL 501


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 82  IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 168
           +++ PY+ N   D+N NGN   P+   +Y
Sbjct: 370 VNSMPYLSNG--DHNNNGNTSSPVSRFSY 396


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 58  LHGNGYEPIDNRPYIVNPPKDYNPNGNGY 144
           L G G +  D  PY ++P   Y P G  Y
Sbjct: 185 LQGAGVKA-DINPYNLSPYSQYGPEGTAY 212


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 67   NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPPFPGAR 201
            N Y PI      VNP   Y P+G        G+  V PP  P  R
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHG--------GSQIVPPPKQPANR 1018


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 55  ILHGNGYEPIDNRPYIVNPPKD 120
           I+ G   EP+ +  YI NPP +
Sbjct: 285 IISGGHLEPVTDITYINNPPSN 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,384
Number of Sequences: 5004
Number of extensions: 30144
Number of successful extensions: 79
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)