Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6b21
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 31 0.22
01_03_0005 + 11568545-11569119,11569179-11569191 29 0.89
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 28 2.0
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 27 2.7
03_06_0471 + 34169562-34169892,34170121-34170347 27 3.6
01_01_0082 + 625198-625719 27 3.6
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 26 6.2
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 26 6.2
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 26 8.3
11_01_0531 - 4192567-4193253,4193900-4194427 26 8.3
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 26 8.3
08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301... 26 8.3
02_05_0963 - 33126238-33126831 26 8.3
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 26 8.3
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 31.1 bits (67), Expect = 0.22
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 79 PIDNRPYIVNPPKDYNPNGNG-YEPIDNGAYYVDPPPFPGA 198
P + PY PP P G G Y N Y PPP+PGA
Sbjct: 641 PPNTSPYGQAPPPGSAPGGYGQYGYSQNQQGYGAPPPYPGA 681
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +1
Query: 106 NPPKDYNPNGNGYEPIDNGAYYVDPPPFPGARGG 207
+PP Y+ G G G YY PPP G GG
Sbjct: 92 SPPPPYSGGGGGSSTGGGGIYY--PPPTGGGGGG 123
>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 28 DNS*SYKNEILHGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 150
D++ ++KN + +G + I R Y PPK G G P
Sbjct: 1133 DSAINFKNRLSPVDGSDGIIRRAYSQKPPKALERTGRGLSP 1173
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 109 PPKDYNPNGNGYEPIDNGAYYVDPPPFPGARGG 207
PP Y N GY+ G +PPP+ G G
Sbjct: 326 PPSAYQGNNPGYQGGGPGYQGGNPPPYQGGNPG 358
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Frame = +1
Query: 73 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY----YVDPPPFPGA 198
Y P P PP Y P+ GY P GAY Y P +P A
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPA 98
>01_01_0082 + 625198-625719
Length = 173
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 64 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 183
G GY P + NP YNP +G+ N Y+ PP
Sbjct: 100 GGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP 135
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 28 DNS*SYKNEILHGNGYEPIDNRPYIVNPPKDYNPNGN 138
D+S YK++ HGNG E D Y+ + P + GN
Sbjct: 107 DSSREYKDD--HGNGTEEDDEWEYVEDGPAEIIWEGN 141
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 79 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPP 186
PID P ++PP+ +P P NG ++PPP
Sbjct: 278 PIDP-PRPIDPPRPIDPPRPIDPPRPNGTRTIEPPP 312
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -1
Query: 228 FLRYSLLPTASTRERGRVHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRFVAVSMKNFI 49
F R+S+LP S R V+ VVD + + ++ RA +N+F A+S N++
Sbjct: 229 FGRFSILPFGSGENRREEQVLFDVVD--IPYNYNAIL------GRATLNQFEAISHHNYL 280
>11_01_0531 - 4192567-4193253,4193900-4194427
Length = 404
Score = 25.8 bits (54), Expect = 8.3
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = +2
Query: 35 RDHIKMKFFMETATNLLTTARTSLIL---PKITTLMETATNLST---TVHITWTLPLSLV 196
RD+I K+FM T +TT+ ++IL K A + + T+ W +SL+
Sbjct: 235 RDNISFKYFMVLDTFAITTSVVAVILLVYGKTAAAAHLAVSWKSFVVTLQCIWVSLVSLI 294
Query: 197 LA 202
LA
Sbjct: 295 LA 296
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +1
Query: 79 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP---PFP 192
P + P IV P Y P+ YEP Y +PP P+P
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPYP 675
>08_02_1512 +
27627740-27629009,27629111-27629256,27629842-27630101,
27630346-27630412,27630511-27630545,27630818-27631587,
27631633-27631793
Length = 902
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +1
Query: 85 DNRPYIVNPPKDYNPNGNGYEPIDNGAYYVD--PPPFP 192
++RP VN Y P P G+YY PPP P
Sbjct: 215 EHRPQTVNATVHYYPGDGAAGPPLPGSYYGSAAPPPSP 252
>02_05_0963 - 33126238-33126831
Length = 197
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 82 IDNRPYIVNPPKDYNPNGNGYEPIDNGAY-YVDPPP 186
ID RP + +PP Y+P G G AY ++ PPP
Sbjct: 131 IDWRPVMAHPPPLYSPPGWG----GGHAYDFLQPPP 162
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 88 NRPYIVNPPKDYNPNGNGYEPIDNGAYYVD 177
N PY+ NP +D N +EP+D+ +D
Sbjct: 385 NYPYVSNP-EDPNHEPRQHEPLDSDVQVID 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,122,141
Number of Sequences: 37544
Number of extensions: 211143
Number of successful extensions: 530
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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