Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6b18
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 658 YDNLKFKYEKKIRNVINLY-VTRCCM 732
           YD+L   Y K +R V+N   V R C+
Sbjct: 33  YDDLLSNYNKLVRPVVNTSDVLRVCI 58


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 658 YDNLKFKYEKKIRNVINLY-VTRCCM 732
           YD+L   Y K +R V+N   V R C+
Sbjct: 33  YDDLLSNYNKLVRPVVNTSDVLRVCI 58


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 53  GESDPRNPTASSC*KTRCGESQRGKEAKSETPKAGQG 163
           GE+ PR+P AS     +C  +       + +P+  QG
Sbjct: 734 GEASPRSPNASPSPAEQCAST---TTITARSPQGSQG 767


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 658 YDNLKFKYEKKIRNVINL 711
           YD+L   Y K +R V+N+
Sbjct: 29  YDDLLSNYNKLVRPVVNV 46


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 246 WYPCAWLQIL*TAFHAPVC 190
           +YPC W +I  T     +C
Sbjct: 485 YYPCCWWKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 246 WYPCAWLQIL*TAFHAPVC 190
           +YPC W +I  T     +C
Sbjct: 538 YYPCCWWKICWTITTPAIC 556


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,542
Number of Sequences: 438
Number of extensions: 3368
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)