Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6b17
         (211 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    68   1e-13
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    68   1e-13
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   0.34 
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   1.4  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   1.8  
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    24   3.2  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   4.2  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    23   4.2  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    23   4.2  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    23   5.5  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    22   9.6  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    22   9.6  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    22   9.6  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    22   9.6  

>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 68.1 bits (159), Expect = 1e-13
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +1

Query: 4   KKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 129
           K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL  L
Sbjct: 101 KILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 68.1 bits (159), Expect = 1e-13
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +1

Query: 4   KKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 129
           K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL  L
Sbjct: 98  KVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKL 139


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 117 RWSFLAEIFDDNTGAADNFPCLAIL 43
           RW +LA +F  N  A  N P + +L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLL 281


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -1

Query: 85  QHRSSRQFSLPCHPCQSCRD-QPILQAF 5
           + ++ +QF LP  PCQ+  + +PI+++F
Sbjct: 226 KRKALKQFPLPPDPCQALANLRPIVKSF 253


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 59  GKLSAAPVLSSKISARKLQR 118
           G  S+A +L+ K+ ARKLQR
Sbjct: 28  GTSSSANILNGKLLARKLQR 47


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 83  LSSKISARKLQRWMCSRTTSSRRAN 157
           L S ++ R+LQ W  ++  S RR+N
Sbjct: 70  LKSSMTPRELQIWFQNKRQSLRRSN 94


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 89  MTTQEQPTIFLALPSLSILQRPAHSPSF 6
           M  QEQ  +F + PSL    R   +PSF
Sbjct: 297 MFIQEQAQLFPSKPSLRKTTRREQAPSF 324


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 86  TTQEQPTIFLALPSLSILQRPA 21
           T    P I    PS+S+ QRPA
Sbjct: 556 TAMPHPNITSPSPSISVTQRPA 577


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 123 IQRWSFLAEIFDDNTGAADNFPCLAILVNLAETSPFSKL 7
           I  W+F A +     GAA    C  ++   AET PF+ L
Sbjct: 166 ITPWNFPAAMITRKVGAALAAGCTVVIRPAAET-PFTAL 203


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +2

Query: 62   KLSAAPVLSSKISARKLQRWMCSR 133
            +++ +P++  K S+R  Q+ +CS+
Sbjct: 944  RITRSPIIGDKFSSRHGQKGICSQ 967


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 76  SCVVIKDFGEETPALDVLKDYLK 144
           SC+++ +  E T A D+L   +K
Sbjct: 192 SCIILDEAHERTLATDILMGLMK 214


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 14  ENGLVSARLTRMARQGKLSAAPVLSSKI 97
           ENGL +   +R A  G + +  VLS K+
Sbjct: 133 ENGLENCANSRFAPGGDIDSFRVLSQKL 160


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 120 QRWSFLAEIFDDNTGAADNFPCL 52
           Q W   +E     TGAADN  CL
Sbjct: 227 QAWDADSEQLTLATGAADNTVCL 249


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 84   NTGAADNFPCLAILVNLAETSPFSKL 7
            NTGA   + C  IL  L   + FS++
Sbjct: 1584 NTGAHSAYDCYDILSKLHAINDFSRI 1609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 853,997
Number of Sequences: 5004
Number of extensions: 13349
Number of successful extensions: 43
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)