Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6b17
         (211 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726...    86   4e-18
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264...    85   1e-17
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671...    27   1.6  
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340...    26   3.6  
08_02_1183 - 24998698-24998913                                         25   8.4  

>07_01_0875 -
           7265529-7265588,7265681-7265746,7266008-7266293,
           7267138-7267142
          Length = 138

 Score = 85.8 bits (203), Expect = 4e-18
 Identities = 34/47 (72%), Positives = 43/47 (91%)
 Frame = +1

Query: 4   KKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 144
           K LGEWAGLCKID +GKARK+VGCSCVV+KDFGEE+  L++++DY+K
Sbjct: 90  KTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESEGLNIVQDYVK 136


>07_01_0360 +
           2646279-2646283,2647113-2647398,2648043-2648108,
           2648199-2648258
          Length = 138

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 33/47 (70%), Positives = 43/47 (91%)
 Frame = +1

Query: 4   KKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 144
           K LGEWAGLCKID +GKARK+VGCSCVV+KD+GEE+  L++++DY+K
Sbjct: 90  KTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQDYVK 136


>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
            29768395-29768637,29768704-29770203
          Length = 1537

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -1

Query: 76   SSRQFS-LPCHPCQSCRD 26
            SSR+FS LPC PC S RD
Sbjct: 1207 SSREFSVLPCQPCCSERD 1224


>09_02_0042 -
           3402424-3402534,3403242-3403345,3403448-3403562,
           3404344-3404391,3404519-3404608,3404819-3404893,
           3405001-3405153,3405695-3405779,3408051-3408121,
           3408243-3408293,3409037-3409453,3409529-3409660,
           3409779-3409892,3411113-3411179,3411264-3411397,
           3411486-3411701,3412627-3413418
          Length = 924

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 78  GAADNFPCLAILVNLAE 28
           GA D F CLA+ +NL E
Sbjct: 590 GAEDPFQCLAVCINLTE 606


>08_02_1183 - 24998698-24998913
          Length = 71

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 52 CHPCQSCRDQPIL 14
          CH  + CRD+P+L
Sbjct: 56 CHASEGCRDEPLL 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,562,074
Number of Sequences: 37544
Number of extensions: 89498
Number of successful extensions: 325
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)