Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6b17
         (211 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    58   6e-10
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z82062-4|CAB04888.1|  266|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AL031627-4|CAA20957.1|  230|Caenorhabditis elegans Hypothetical ...    26   4.2  
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    26   4.2  
AF101318-4|AAC69346.1|  337|Caenorhabditis elegans Seven tm rece...    25   5.6  
Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AC119287-2|AAM19064.2|  218|Caenorhabditis elegans Glutathione s...    25   7.3  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 58.4 bits (135), Expect = 6e-10
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = +1

Query: 4   KKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDY 138
           K +GE+ GLCK DK+GKARK+VGCS  V+ ++G E     +L DY
Sbjct: 91  KIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDY 135


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 28  LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 135
           L K  K+ K +K+     + ++DF EETP  +  +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523


>Z82062-4|CAB04888.1|  266|Caenorhabditis elegans Hypothetical
           protein W02A11.8 protein.
          Length = 266

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 25  GLCKIDKDGKARKIVGCSCVVIKDFGEET 111
           G C I+ D    K VG +   ++DFGEET
Sbjct: 80  GKCTIEADITIIKEVGDARAKLRDFGEET 108


>AL031627-4|CAA20957.1|  230|Caenorhabditis elegans Hypothetical
           protein Y102A5C.13 protein.
          Length = 230

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 25  GLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 129
           G+CK  K+     ++GC  V++K+   +  +LD++
Sbjct: 11  GVCKSKKNTHLDSLLGCLSVLMKNSELQLDSLDII 45


>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
           spermatogenesis protein15 protein.
          Length = 1219

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 20  GLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 127
           G V+AR+T +A  G   A    S  ++ R    W C
Sbjct: 23  GFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58


>AF101318-4|AAC69346.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 68 protein.
          Length = 337

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 71  PTIFLALPSLSILQRPAHSPSF 6
           PTIFL +P+  IL  P  +P F
Sbjct: 253 PTIFLVIPASPILVLPLLAPMF 274


>Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical
           protein W08D2.7 protein.
          Length = 1026

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 37  IDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 135
           IDK     ++ G      K FG + P LD ++D
Sbjct: 735 IDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQD 767


>U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical
           protein F59A6.4 protein.
          Length = 752

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 1   NKKLGEWAGLCKIDK-DGKARKIVGCSCVVIKDF 99
           NKK  +W G C +D+  G   + V C     +DF
Sbjct: 381 NKKSCDWLGKCGLDEIGGDTDRSVDCRMTGDRDF 414


>AC119287-2|AAM19064.2|  218|Caenorhabditis elegans Glutathione
           s-transferase protein35 protein.
          Length = 218

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 85  VIKDFGEETPALDVLKDYLK 144
           ++KDF E+   L  LKDY+K
Sbjct: 192 ILKDFQEKIYGLPELKDYIK 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,700,389
Number of Sequences: 27780
Number of extensions: 76890
Number of successful extensions: 235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)