Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6b17
         (211 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   1.6  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    19   6.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    19   6.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   6.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    19   8.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    19   8.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   8.5  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 1.6
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 83  TQEQPTIFLALPSL 42
           T++Q T+F+A+P +
Sbjct: 67  TEQQSTVFVAIPRI 80


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 150 RRLEVVLEHIQR 115
           R+++ VL HIQR
Sbjct: 89  RQIKKVLSHIQR 100


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 150 RRLEVVLEHIQR 115
           R+++ VL HIQR
Sbjct: 89  RQIKKVLSHIQR 100


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 933

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 18 MGWSLQD*QGWQGKENCRLL 77
          M W  +D + W+GK + R L
Sbjct: 1  MRWINRDGEKWKGKMSQRPL 20


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 107 SSPKSLMTTQEQPTIFLAL 51
           SSP S+ + Q+Q ++   L
Sbjct: 817 SSPSSVQSGQQQQSVLQGL 835


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 105 GNSSVGC 125
           GNS+VGC
Sbjct: 321 GNSAVGC 327


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 82  HRSSRQFSLPCHP 44
           + S  QF+ PC P
Sbjct: 384 YASGAQFATPCTP 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,827
Number of Sequences: 438
Number of extensions: 776
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)