Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6b02
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   1.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   8.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   8.3  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 83  NITYCSKIRIKTRYAKPFYIVFTCKLSQ-LVFRRSFCV 193
           N+  C+KI+   RY   +Y  F   L+  +V   S CV
Sbjct: 100 NLESCAKIKKTKRYCYYYYAFFGVHLAYGVVIIYSICV 137


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +2

Query: 335 LKYIGMRNEQAACYAAQATGYLTGKPGVCLV 427
           +KY  +  E  +     A G +TG  G  +V
Sbjct: 269 MKYAALATENFSSLLEPAVGTMTGAGGTAIV 299


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory
          receptor candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 73 IIVLSL*TLYFARLLVSFLLIFF 5
          I+ LSL  + F   LV +L IFF
Sbjct: 4  ILKLSLKDIVFINPLVKYLNIFF 26


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 582 TASMQPGRPP 611
           TAS  PGRPP
Sbjct: 33  TASSWPGRPP 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,593
Number of Sequences: 336
Number of extensions: 3766
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)