Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6b02
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 142 3e-35
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 73 4e-14
SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.72
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 27 2.2
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 2.2
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 3.8
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc... 26 5.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 5.1
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 6.7
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 25 6.7
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 6.7
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 8.8
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 25 8.8
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr... 25 8.8
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 142 bits (345), Expect = 3e-35
Identities = 65/136 (47%), Positives = 94/136 (69%)
Frame = +2
Query: 215 MGIDGNTILAESLKKQGVEYVFGIVGIPVIETAMAFQSAGLKYIGMRNEQAACYAAQATG 394
M I + ++A++L V+ VFGIVGIPVIE A Q++G++++G RNEQ+A YAA A G
Sbjct: 1 MSISFSELVAKTLLDLEVKVVFGIVGIPVIEICEAIQASGIRFVGFRNEQSAAYAATAYG 60
Query: 395 YLTGKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSS 574
YLT +PGVC+VV GPG++H + G+ N++ N WPL+++AGS + G FQE QV
Sbjct: 61 YLTQRPGVCVVVGGPGVVHAMAGVFNSKTNRWPLLLLAGSSETFQQNCGAFQELDQVSYL 120
Query: 575 RMYCKYAARPPSPRLI 622
+ K A RPPSP+++
Sbjct: 121 SPHTKLAVRPPSPKMV 136
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 72.5 bits (170), Expect = 4e-14
Identities = 47/127 (37%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Frame = +2
Query: 215 MGIDGNTILAESLKKQGVEYVFGIVGIPVIETAMA-FQSAGLKYIGMRNEQAACYAAQAT 391
+G G I + + K V++VFG G ++ A ++S ++I R+EQAA +AAQA
Sbjct: 85 VGKTGGEIFHDMMLKHNVKHVFGYPGGAILPVFDAIYRSPHFEFILPRHEQAAGHAAQAY 144
Query: 392 GYLTGKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDS 571
+T KPGV LV SGPG + I +A+A + PLVV +G FQE V
Sbjct: 145 SRVTKKPGVVLVTSGPGATNVITPIADALADGTPLVVFSGQVATSAIGSDAFQEADMVGI 204
Query: 572 SRMYCKY 592
SR K+
Sbjct: 205 SRSCTKW 211
>SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 114
Score = 28.7 bits (61), Expect = 0.72
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = -2
Query: 330 ADWK------AIAVSMTGIPTIPNTYSTPCFFKLSAKIVFPSIPMLPFNF*DTQN 184
ADW+ V MTGI I T K+ +I P++P+LPF TQN
Sbjct: 45 ADWRLQILKEGFTVPMTGI--ISQYLKTDDHIKIVKEIYPPNLPVLPFRVYTTQN 97
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 418 LFSGIRAGTTSLHRGNGQCSSKLLAIGC 501
LF + ++ RGN +C S++L +GC
Sbjct: 151 LFEPMSVAVHAMTRGNLKCGSRVLVMGC 178
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 398 LTGKPGVCLVVSGPGLLHCIGGMAN 472
L KP CL++ G + CIG + N
Sbjct: 704 LRNKPDSCLIIDGESMEFCIGYLQN 728
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/58 (20%), Positives = 27/58 (46%)
Frame = +2
Query: 254 KKQGVEYVFGIVGIPVIETAMAFQSAGLKYIGMRNEQAACYAAQATGYLTGKPGVCLV 427
K Q ++YV + + + A +AGL +++E+ + +A + G+C +
Sbjct: 482 KSQFLKYVCNFLPRAIYTSGKASSAAGLTAAVVKDEETGDFTIEAGALMLADNGICAI 539
>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 395 YLTGKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAG 511
Y+T PG+ L V G GL VNC ++I G
Sbjct: 194 YITMSPGIGLDVKGDGLGQQYRTPEEVIVNCGSDIIIVG 232
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 324 WKAIAVSMTGIPTIPNTYSTPCF 256
W ++ S+TG +P T S CF
Sbjct: 103 WSLVSTSVTGTVYVPYTSSVACF 125
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 138 ISCSHAN*ANWYFEDHF 188
I HAN + WYF HF
Sbjct: 130 IGGEHANFSKWYFASHF 146
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 598 GCILAVHATRIHLRPFLEATNSFMI 524
GC+L H ++ LRP L+ +F +
Sbjct: 197 GCVLQGHISKFTLRPDLKCDGTFFV 221
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 270 STPCFFKLSAKIVFPSIPMLPFNF*DTQNDLRNTNWLNLHVNTI*NGLAYRVFILI 103
S+P F + IVF + P +F + LR+T+ ++L L Y VFI++
Sbjct: 132 SSPMFLRRQTWIVFALFVLTPLSFLKRLDSLRHTSVISL------IALCYLVFIVL 181
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 8.8
Identities = 6/21 (28%), Positives = 14/21 (66%)
Frame = -1
Query: 307 FNDWYPNYPKYIFNTLFLQTF 245
+ +WY +P+Y+++T + F
Sbjct: 345 YREWYSFFPRYVYSTNCMNDF 365
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 289 WDTSH*NSNGFPISWSK 339
W+ H +S G P+SWS+
Sbjct: 130 WEKIHHDSTGKPVSWSQ 146
>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.0 bits (52), Expect = 8.8
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 239 LAESLKKQGVEYVFGIVGIPVIE--TAMAFQSAGLKYIGMRNEQAACYAAQATGYL---T 403
+A+ ++K+GV+++FG V T + Q A I + + A TGYL T
Sbjct: 153 MAKEIEKRGVKFIFGSVKEVSKHHITYVPKQEAEDTIIKAQVHKTLVSAGPWTGYLLPFT 212
Query: 404 GKPGVCLVV 430
G G+C+ +
Sbjct: 213 GIAGLCIPI 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,679
Number of Sequences: 5004
Number of extensions: 59670
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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