Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6b02
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0047 + 17557087-17558350,17558396-17558475,17559115-175591... 125 3e-29
04_03_0737 - 19152942-19154930 75 3e-14
04_03_0739 + 19180048-19182039 71 6e-13
02_03_0380 + 18335903-18337837 66 2e-11
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 36 0.020
05_05_0170 + 22913791-22914315,22914418-22914581,22914675-229153... 34 0.10
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313... 32 0.32
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 30 1.3
03_01_0119 + 935554-937161 30 1.7
06_03_0209 + 17965828-17965888,17965913-17966329,17966501-17966523 29 2.3
11_06_0512 - 24460391-24462337 29 3.0
07_01_0343 + 2486556-2486709,2486936-2486994,2487081-2487136,248... 29 3.9
06_03_1045 - 27111771-27112097,27112205-27112330,27112434-271126... 27 9.1
>01_05_0047 +
17557087-17558350,17558396-17558475,17559115-17559149,
17559545-17559551,17560405-17560719
Length = 566
Score = 125 bits (301), Expect = 3e-29
Identities = 56/140 (40%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Frame = +2
Query: 215 MGIDGNTILAESLKKQGVEYVFGIVGIPVIETAMAFQSAGLKYIGMRNEQAACYAAQATG 394
M +DG+ + +L G ++FG+VGIPV A +AG++++ RNEQ+A YAA A G
Sbjct: 1 MKVDGSALAGRALAAAGARHMFGVVGIPVTSLASRAAAAGVRFLAFRNEQSAGYAAAAYG 60
Query: 395 YLTGKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSS 574
+LTG PG+ L VSGPG +H + G+++A N WPL++++GSC + G FQE Q+ ++
Sbjct: 61 FLTGSPGLLLTVSGPGCVHGLAGLSHATANAWPLLMVSGSCSQPDAGRGDFQELDQIAAT 120
Query: 575 RMYCKYAARPPS----PRLI 622
+ + K A + + PRL+
Sbjct: 121 KPFIKIAVKATTIADIPRLV 140
>04_03_0737 - 19152942-19154930
Length = 662
Score = 75.4 bits (177), Expect = 3e-14
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = +2
Query: 227 GNTILAESLKKQGVEYVFGIVGIPVIETAMAF-QSAGLKYIGMRNEQAACYAAQATGYLT 403
G IL E+L + GV VFG G +E A +S ++ +R+EQ +AA +
Sbjct: 91 GADILVEALGRCGVRDVFGYPGGASMEIHQALTRSPAIRNHLLRHEQGEAFAASGYARSS 150
Query: 404 GKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSSRMY 583
G+PGVC+ SGPG + + +A+A ++ PLV I G P FQE P V+ +R
Sbjct: 151 GRPGVCVATSGPGATNLVSALADAHLDSVPLVAITGQVPRRMIGTDAFQETPIVELTRSI 210
Query: 584 CKY 592
K+
Sbjct: 211 TKH 213
>04_03_0739 + 19180048-19182039
Length = 663
Score = 71.3 bits (167), Expect = 6e-13
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = +2
Query: 227 GNTILAESLKKQGVEYVFGIVGIPVIETAMAF-QSAGLKYIGMRNEQAACYAAQATGYLT 403
G I+ E+L++ GV VF G +E A +S ++ +R+EQ +AA +
Sbjct: 87 GADIVVEALERCGVRDVFEYPGGASMEIHQALTRSPVIRNHLLRHEQGEAFAASGYARSS 146
Query: 404 GKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSSRMY 583
G+PGVC+ SGPG + + +A+A ++ PLV I G P FQE P V+ +R
Sbjct: 147 GRPGVCVATSGPGATNLVSALADAHLDSVPLVAITGQAPRRMIGTDAFQETPIVEFTRSI 206
Query: 584 CKY 592
K+
Sbjct: 207 TKH 209
>02_03_0380 + 18335903-18337837
Length = 644
Score = 66.1 bits (154), Expect = 2e-11
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Frame = +2
Query: 227 GNTILAESLKKQGVEYVFGIVGIPVIETAMAF-QSAGLKYIGMRNEQAACYAAQATGYLT 403
G IL E+L++ GV VF G +E A +S + R+EQ +AA +
Sbjct: 73 GADILVEALERCGVSDVFAYPGGASMEIHQALTRSPVITNHLFRHEQGEAFAASGYARAS 132
Query: 404 GKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSSRMY 583
G+ GVC+ SGPG + + +A+A ++ P+V I G P FQE P V+ +R
Sbjct: 133 GRVGVCVATSGPGATNLVSALADALLDSVPMVAITGQVPRRMIGTDAFQETPIVEVTRSI 192
Query: 584 CKY 592
K+
Sbjct: 193 TKH 195
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 36.3 bits (80), Expect = 0.020
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +2
Query: 239 LAESLKKQGVEYVFGIVG---IPVIETAMAFQSAGLKYIGMRNEQAACYAAQATGYLTGK 409
LA L + GV VF + G + +++ +A GL+ +G NE A YAA G
Sbjct: 20 LARRLVQVGVSDVFAVPGDFNLTLLDHLIA--EPGLRLVGCCNELNAGYAADGYARARGV 77
Query: 410 PGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAG 511
G C V G L + +A A P++ IAG
Sbjct: 78 -GACAVTFTVGGLSVLNAIAGAYSENLPVICIAG 110
>05_05_0170 +
22913791-22914315,22914418-22914581,22914675-22915325,
22915425-22915542,22915635-22915823,22915948-22916118
Length = 605
Score = 33.9 bits (74), Expect = 0.10
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +2
Query: 239 LAESLKKQGVEYVFGIVG---IPVIETAMAFQSAGLKYIGMRNEQAACYAAQATGYLTGK 409
LA L + G VF + G + +++ +A GLK IG NE A YAA G
Sbjct: 49 LARRLVQIGATDVFAVPGDFNLTLLDYLIA--EPGLKLIGCCNELNAGYAADGYARARG- 105
Query: 410 PGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAG 511
G C V G L + +A A P++ I G
Sbjct: 106 VGACAVTFTVGGLSVLNAIAGAYSENLPVICIVG 139
>01_01_0417 -
3135502-3135672,3135759-3135947,3136037-3136154,
3136398-3137048,3137146-3137309,3138598-3139098
Length = 597
Score = 32.3 bits (70), Expect = 0.32
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Frame = +2
Query: 239 LAESLKKQGVEYVFGIVG------IPVIETAMAFQSAGLKYIGMRNEQAACYAAQATGYL 400
LA L + G VF + G + +E G++ +G NE A YAA
Sbjct: 34 LARRLAEVGARDVFTVPGDFNLTLLDELEAEAGAGHGGVRLVGCCNELNAAYAADGYARA 93
Query: 401 TGKP-GVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAG 511
G G C V G L I +A A P+V I G
Sbjct: 94 RGGGVGACAVTFTVGGLSAINAVAGAFSENLPVVCIVG 131
>02_04_0371 +
22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/90 (20%), Positives = 40/90 (44%)
Frame = +2
Query: 344 IGMRNEQAACYAAQATGYLTGKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPE 523
I +E++ + A G + KP + + SG + + + + A + PL+++ P
Sbjct: 414 ISCYDERSLGFHALGYGRGSRKPAIVITSSGTAVSNLLPSVVEASQDFVPLILLTADRPP 473
Query: 524 DHEAIGGFQEWPQVDSSRMYCKYAARPPSP 613
+ + +G Q QV+ + ++ P P
Sbjct: 474 ELQDVGANQAINQVNHFGSFVRHFFSLPPP 503
>03_01_0119 + 935554-937161
Length = 535
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 333 PADWKAIAVSMTGIPT-IPNTYSTPCFFK 250
P WKAIA + G+P + + S PCF K
Sbjct: 16 PGRWKAIAAKLEGLPACLSDLSSHPCFAK 44
>06_03_0209 + 17965828-17965888,17965913-17966329,17966501-17966523
Length = 166
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 137 YIVFTCKLSQLVFRRSFCVSQKLNGSMGID--GNTILAESLKKQGVEYVFGIVGI 295
++VFTCK ++L++++ + ++ +G D G+ ++ E+++K G +GI
Sbjct: 27 HMVFTCKRAKLIWKQ-LSIWSRIQPILGFDRSGSVLVEEAIRKGGKVSHLNAIGI 80
>11_06_0512 - 24460391-24462337
Length = 648
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = -1
Query: 154 ACEHDIKWLSISRFYPYLRTICNVPCKIIVLS 59
AC HD L SRF+P L TI NV + LS
Sbjct: 286 ACLHDGGLLQGSRFHPQLSTIYNVGQSYVKLS 317
>07_01_0343 +
2486556-2486709,2486936-2486994,2487081-2487136,
2487380-2487432,2488401-2488477,2489233-2489326,
2489551-2489609,2489698-2489753,2489853-2489905,
2490025-2490119
Length = 251
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +2
Query: 98 SKIRIKTRYAKPFYIVFTCKLSQLVFRRSFCVSQKLNGSMGID--GNTILAESLKKQGVE 271
SK+R K A+P I+ K ++ + + + + G+D G + L + +
Sbjct: 22 SKLRGKGTMARPSLIIVAKKAKKIQTSQPYGPAGGVVFKEGVDASGRVAKGKGLYQFSNK 81
Query: 272 YVFGIVGIPVIETAMAFQSAGLKYIGMRNE 361
Y + G I T + S G Y+G RNE
Sbjct: 82 YGANVDGYSPIYTPEEWSSTGDVYVGDRNE 111
>06_03_1045 -
27111771-27112097,27112205-27112330,27112434-27112673,
27113343-27113429,27113520-27113652,27113711-27113820,
27114308-27114424,27114526-27114610,27114693-27114796,
27115530-27115612,27115729-27115819
Length = 500
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 453 ASGEWPMLK*TVGHWLL*LARVLKIMKLLVASRNGL 560
A GE P+L GH + +AR+ K+ L V R G+
Sbjct: 426 AGGETPVLMSGAGHDAMAMARLTKVGMLFVRCRGGV 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,775,304
Number of Sequences: 37544
Number of extensions: 411391
Number of successful extensions: 826
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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