Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6b02
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...   179   1e-45
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...   179   1e-45
AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical ...    75   5e-14
U97551-3|AAB52860.2|  215|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score =  179 bits (436), Expect = 1e-45
 Identities = 87/141 (61%), Positives = 102/141 (72%), Gaps = 2/141 (1%)
 Frame = +2

Query: 194 SQKLNGSMG--IDGNTILAESLKKQGVEYVFGIVGIPVIETAMAFQSAGLKYIGMRNEQA 367
           S+KL    G  +DG +I A +LK QGVEY+FG+VG PVIE  MA Q+ G+KYIG RNEQA
Sbjct: 61  SRKLRNHDGSNMDGASITAAALKSQGVEYMFGVVGFPVIEVGMAAQAHGIKYIGCRNEQA 120

Query: 368 ACYAAQATGYLTGKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGF 547
           A YAAQA GYLTGKP   LVVSGPG+LH IGG+ANA VNCWP+V I G+   D E  G F
Sbjct: 121 AAYAAQAMGYLTGKPVALLVVSGPGILHAIGGLANATVNCWPVVCIGGTADVDLENRGAF 180

Query: 548 QEWPQVDSSRMYCKYAARPPS 610
           QEW Q +S R  CK+ +RP S
Sbjct: 181 QEWSQQESVRNSCKHVSRPTS 201


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score =  179 bits (436), Expect = 1e-45
 Identities = 87/141 (61%), Positives = 102/141 (72%), Gaps = 2/141 (1%)
 Frame = +2

Query: 194 SQKLNGSMG--IDGNTILAESLKKQGVEYVFGIVGIPVIETAMAFQSAGLKYIGMRNEQA 367
           S+KL    G  +DG +I A +LK QGVEY+FG+VG PVIE  MA Q+ G+KYIG RNEQA
Sbjct: 61  SRKLRNHDGSNMDGASITAAALKSQGVEYMFGVVGFPVIEVGMAAQAHGIKYIGCRNEQA 120

Query: 368 ACYAAQATGYLTGKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGF 547
           A YAAQA GYLTGKP   LVVSGPG+LH IGG+ANA VNCWP+V I G+   D E  G F
Sbjct: 121 AAYAAQAMGYLTGKPVALLVVSGPGILHAIGGLANATVNCWPVVCIGGTADVDLENRGAF 180

Query: 548 QEWPQVDSSRMYCKYAARPPS 610
           QEW Q +S R  CK+ +RP S
Sbjct: 181 QEWSQQESVRNSCKHVSRPTS 201


>AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical
           protein T26C12.1 protein.
          Length = 640

 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 43/125 (34%), Positives = 64/125 (51%)
 Frame = +2

Query: 227 GNTILAESLKKQGVEYVFGIVGIPVIETAMAFQSAGLKYIGMRNEQAACYAAQATGYLTG 406
           G  ++A  LK   VE +F + G  +    +A +  G+K +  R+E  A +AA A   L  
Sbjct: 58  GGELVASVLKAHDVEEIFVLCGGHISPILVAAEKLGIKIVDTRHEVTAVFAADAVARLRQ 117

Query: 407 KPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSSRMYC 586
             GV  V +GPGL + I  + NAQ+   PL++I G+ P   +  G  Q+  Q+   R  C
Sbjct: 118 SIGVAAVTAGPGLTNTITAVKNAQMAESPLLLIGGAAPTLLKGRGALQDIDQMVLFRPLC 177

Query: 587 KYAAR 601
           KY AR
Sbjct: 178 KYVAR 182


>U97551-3|AAB52860.2|  215|Caenorhabditis elegans Hypothetical
           protein T01B10.5 protein.
          Length = 215

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 272 IQHPVSSNFQLRLYFRRYPCCRLIFEIRKMIFEI 171
           ++H ++ NF +  YF  + C   +F I  ++F I
Sbjct: 115 VEHVITQNFDVNGYFMGFVCTLFVFVIAMILFTI 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,714,963
Number of Sequences: 27780
Number of extensions: 352410
Number of successful extensions: 756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)