Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6a23
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 71 2e-13
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 56 5e-09
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 34 0.023
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.023
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 33 0.040
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 29 0.65
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 29 0.86
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 27 2.0
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 27 2.6
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 3.5
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 4.6
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 26 4.6
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 26 4.6
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 26 4.6
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 6.1
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 26 6.1
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 25 8.0
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 70.9 bits (166), Expect = 2e-13
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Frame = +1
Query: 376 DQSREFMAVFPDIVRDLTETGKHIDVPE-ASKWLAKLLQYNVPNGKKNRGLATILAYKML 552
D+ +F + P V ++ K I++P+ ++W L +N GK NRGL+ I +Y++L
Sbjct: 5 DKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDSYEIL 64
Query: 553 EKKENLTPENILLANVMGWCVEMFHTHQLLLNDIMEGTTMRRGVPCWHRRP 705
L + A V+GW VE+ + L+ +DIM+ + RRG PCW+ P
Sbjct: 65 -LGHPLDEAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMP 114
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 56.0 bits (129), Expect = 5e-09
Identities = 32/108 (29%), Positives = 58/108 (53%)
Frame = +1
Query: 373 KDQSREFMAVFPDIVRDLTETGKHIDVPEASKWLAKLLQYNVPNGKKNRGLATILAYKML 552
K + +F V + +R++ E+ ++ PE ++ L ++ N GK NRGLA + + L
Sbjct: 12 KKRLLDFFPVVLEGIREILESMQYF--PEETEKLLYSIKRNTLGGKNNRGLAVLQSLTSL 69
Query: 553 EKKENLTPENILLANVMGWCVEMFHTHQLLLNDIMEGTTMRRGVPCWH 696
+E L A ++GW +E+ L+ +DIM+ + RRG+ CW+
Sbjct: 70 INRE-LEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWY 116
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = -2
Query: 614 THHPITFASRMFSGVKFSFFSSIL*ARIVASPLFFLPFGTLYCNSLANHLLA 459
TH I F S +FS F+ + + AR + SP +F+P+GTL N A LL+
Sbjct: 183 THRGIGF-SLIFS--PFAALTRLYLARFLNSPQYFIPYGTLCANVFATLLLS 231
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = -2
Query: 614 THHPITFASRMFSGVKFSFFSSIL*ARIVASPLFFLPFGTLYCNSLANHLLA 459
TH I F S +FS F+ + + AR + SP +F+P+GTL N A LL+
Sbjct: 183 THRGIGF-SLIFS--PFAALTRLYLARFLNSPQYFIPYGTLCANVFATLLLS 231
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 33.1 bits (72), Expect = 0.040
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 531 RGQSPILLTVWYIILQQLSQPFAGFRNIN 445
R P +++ Y+ LQ L++P+ GFRNIN
Sbjct: 522 RAMDPKVVSTSYVSLQILNKPYVGFRNIN 550
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 29.1 bits (62), Expect = 0.65
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 641 RSWWVWNISTHHPITFASRMFSGVKFS 561
RS W W H PI+F FS ++F+
Sbjct: 233 RSIWTWCFVPHLPISFQKSPFSSIEFA 259
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 0.86
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 340 MPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHIDVPEASKWL--AKLLQYNVPNGKK 513
+P + V Q+ F+ F DIV + E GK+ P+AS+ L + L+ + N +K
Sbjct: 320 LPEVPSAMPVPNAQNESFVKSFTDIVHGVQEKGKY---PQASEILDATRFLKTDTNNEQK 376
Query: 514 NRGLATI 534
+TI
Sbjct: 377 PTNNSTI 383
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 654 DVVE*KLVGVEHFDAPSHNVCKQNVLW 574
D VE VG+E+ D P+HN C VL+
Sbjct: 729 DNVERASVGLENTDNPTHNCCFLQVLF 755
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 370 SKDQSREFMAVFPDIVRDLTETGKHIDVPEASKWLAKLLQY 492
++D + ++FP+IVR++ + D+ KW+A L +
Sbjct: 16 ARDIVKTDQSLFPEIVRNILSVANYSDI-RYKKWMANFLWF 55
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 389 SSWLSFRTSSG-ISLRLASTLMFRKPANGWLSCCNIM 496
+SW S R + I R+ ++ + N W SCC ++
Sbjct: 1037 NSWASVRNGAAQILFRIFNSQCSKLGTNAWASCCQLV 1073
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 257 GDLLADWSSLGAMASELVTLVVLL 186
G + DW + G + EL+ LVV+L
Sbjct: 77 GGCIIDWHTCGLFSEELIDLVVVL 100
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 12 DKNKSLLN*IPSNNFF*RNFKTRQILVYNVLKYYKNVLD-KEKLRKVYAGVQK 167
DKN +N + S +FF N + LV + Y+ ++D + L+ V++ +K
Sbjct: 434 DKNDLYINWLKSLSFFQTNSSCAEALVKVIPHYHNKLIDFSQVLQLVFSASEK 486
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +1
Query: 364 AVSKDQSREFMAVFPDIVRDLTE--TGKHIDVPEASKWLAKLLQYNVPNGKKNRGLATIL 537
A+ + +R +A+ PD+++DLTE + K V AS+ L L + P+ K + +
Sbjct: 421 AIREVCARAPLAMTPDLLQDLTEYKSSKDKGVMMASRSLITLYREVAPDMLKRKDRGKLA 480
Query: 538 AYKMLEK 558
+ +M ++
Sbjct: 481 SIEMKDR 487
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 568 LTPENILLANVMGWCVEMFHTHQLLLNDIMEGTTMRRGVP 687
+ P + LA + EM H LL +D+++ +RRG P
Sbjct: 115 ILPSQLRLAQI----TEMIHIASLLHDDVIDHANVRRGSP 150
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +1
Query: 388 EFMAVFPDIVRDLTETGKHIDVPEASKWLAKLLQYNVPNGKKN 516
+ + V D+V+++ + + E WL KL+Q ++ + N
Sbjct: 155 DLLPVLSDLVKEMEKDPASLQAKENEFWLKKLIQTSLHHSSDN 197
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 332 LRKCRWLPEDWPFPRTSPGSSWLSFRTSSGISLR 433
L K R L E W + T+PG S +TSS L+
Sbjct: 112 LNKGRRLIEIWKYYETAPGQSSFEGQTSSDSKLQ 145
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 350 LPEDWPFPRTSPGSSWLSFRTSSGIS-LRLASTLMFRKPANGWL 478
LP P P+ P + W F GI+ + L+F + + W+
Sbjct: 78 LPRAKPLPKPKPETKWQRFARIKGIAPKKREGRLVFDEASGEWV 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,717
Number of Sequences: 5004
Number of extensions: 68093
Number of successful extensions: 236
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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