Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6a23
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...    36   0.038
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    31   0.81 
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF016430-10|AAB65374.1|  467|Caenorhabditis elegans Hypothetical...    29   3.3  
AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    26   6.1  
U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    28   7.5  
U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alph...    28   7.5  
AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical ...    28   7.5  
U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 613 VEMFHTHQLLLNDIMEGTTMRRGVPCWHRR 702
           +E+  +  L+ +DIM+ +  RRG PCW RR
Sbjct: 88  LEIIQSFYLIADDIMDNSETRRGKPCWFRR 117


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 619 MFHTHQLLLNDIMEGTTMRRGVPCWHRRPD 708
           ++ T+  L+  ++  TT+R G+ C  RRPD
Sbjct: 312 IYRTYSTLVKKVLRDTTLRTGIRCDGRRPD 341


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +2

Query: 542 TKCLRRKKI*RQRTFCLQTLWDGASKCSTPTNFYS 646
           TKC   KK       C  T  D  +KC TP NF S
Sbjct: 144 TKCSPGKKCALHTVQCFTTPCDPVAKCETPLNFLS 178


>AF016430-10|AAB65374.1|  467|Caenorhabditis elegans Hypothetical
           protein C05C8.7 protein.
          Length = 467

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 523 LATILAYKMLEKKENLTPENILLANVMGWCVEMF 624
           L ++L YKM E+K+ L PEN L       CV+M+
Sbjct: 310 LCSVLNYKMTEQKDYLVPENKLTE-----CVDMY 338


>AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical
           protein Y105C5B.8 protein.
          Length = 447

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 317 RNL*YFCSFSSLFGPVSSACGDLLADWSSLGAMASE 210
           R + YFC+F S+F P+ S   D+  D   L   + E
Sbjct: 142 RGVAYFCAFFSIFEPLPSVYKDIQRDGHQLNCSSFE 177


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 25.8 bits (54), Expect(2) = 6.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 295 LQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGK 441
           L  Y   L T++P +    T+  +    ++ +  AV PDI + L  TGK
Sbjct: 426 LNFYPMELITISPNQRVRITQQTSSQSQRTTKESAVLPDIRQRLIMTGK 474



 Score = 20.6 bits (41), Expect(2) = 6.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 430 ETGKHIDVPEASKW 471
           ETG+H+  P   KW
Sbjct: 514 ETGEHLINPRDCKW 527


>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +1

Query: 481 LLQYNVPNGKKNRGLATILAYKMLEKKENLTPENILLANV--MGWCVEMFHTHQLLLNDI 654
           LL  N  N   NR ++      +  ++  +     +  N   +G   EM HT  L+ +D+
Sbjct: 96  LLMGNACNSAANRSISEEYLAMLSTERSGIAAHLSVCQNQYKIGMIAEMIHTASLVHDDV 155

Query: 655 MEGTTMRRG 681
           ++    RRG
Sbjct: 156 IDEANTRRG 164


>U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical
           protein T27F7.3a protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 459 FRNINV-LASLSEIPDDVRKDSHELPGLVLGNGQSSGSHRHFLRS 328
           FR I+V L +   +PD+V + +     LV G G  S   RH LRS
Sbjct: 14  FRCISVYLVASWFVPDEVYQSAEVAHHLVYGTGHLSWEWRHSLRS 58


>AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alpha 2
           mannosyltransferaseprotein.
          Length = 496

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 459 FRNINV-LASLSEIPDDVRKDSHELPGLVLGNGQSSGSHRHFLRS 328
           FR I+V L +   +PD+V + +     LV G G  S   RH LRS
Sbjct: 14  FRCISVYLVASWFVPDEVYQSAEVAHHLVYGTGHLSWEWRHSLRS 58


>AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical
           protein Y71G12A.2 protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 394 MAVFPDIVRDLTETGKHIDVPEASKWLAKLLQYNV 498
           M++F D+ + L E       PE+ KWLA+LL   +
Sbjct: 235 MSIFDDLEKLLHEFVLRSGEPESPKWLAQLLNTKI 269


>U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical
           protein W06A11.2 protein.
          Length = 797

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 415 VRDLTETGKHIDVPEASKWLAKLLQYNVPNGKKNRGLATILAYKMLE-KKENLTPENILL 591
           +RDL E+G+H +  E  + +  L++ +    +K  G++ ++     + +K  L   +ILL
Sbjct: 432 IRDLLESGQHFNASEFLRKIINLIETSSCPIRKKHGISYLIELAEHQCQKLTLLEVSILL 491

Query: 592 ANVMGWCVEM 621
             ++   +E+
Sbjct: 492 DTLLNQVLEL 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,774,420
Number of Sequences: 27780
Number of extensions: 405958
Number of successful extensions: 1217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)