Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6a23
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.8  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   3.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   3.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 172 VRRHISKTTSVTNS 213
           VR H++ T SVTNS
Sbjct: 341 VRNHLNSTCSVTNS 354


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 215 MPWPRGWTSRR 247
           MPW +GWT  R
Sbjct: 135 MPWFKGWTVER 145


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 215 MPWPRGWTSRR 247
           MPW +GWT  R
Sbjct: 151 MPWFKGWTVER 161


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 215 MPWPRGWTSRR 247
           MPW +GWT  R
Sbjct: 208 MPWFKGWTVER 218


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 152 INFSKLFFVENIFVVLQY 99
           INF + FF+E +  VL +
Sbjct: 10  INFDRFFFIEGMTNVLDF 27



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 550 LEKKENLTPENILLANVMGWCVEMFH 627
           +++K N+   NIL A+     V +FH
Sbjct: 271 IKRKHNVFVNNILAASACSLFVVIFH 296


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 347 WL-PEDWPFPRTSPGSSWLSFRTSSGISLRLASTLMFRKPANGWLSCCNI 493
           W+ PE  P   T   +S L+  T +  S +    + + K  + W+S C++
Sbjct: 236 WIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSV 285


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 647 LSRSWWVWNISTHHPITFASRMFSGVK 567
           L+ + WV  I T H + + +  F+G++
Sbjct: 52  LTTNCWVTQIWTDHHLKWNASEFAGIR 78


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 254 DLLADWSSLGAMASELVT 201
           D+ AD+ SLG +  EL+T
Sbjct: 543 DISADYWSLGVLMFELLT 560


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,221
Number of Sequences: 438
Number of extensions: 5235
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)