Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6a18
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 33 0.21
04_04_1351 - 32827136-32827984 32 0.36
03_06_0522 - 34494989-34495045,34495171-34495234,34495378-344954... 30 1.5
03_01_0202 + 1605703-1606402,1606681-1606824,1606911-1607063,160... 30 1.5
12_02_0335 - 17669232-17670063,17670619-17672150 29 2.6
08_02_0482 - 17643603-17643955,17644024-17646604 29 3.4
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 29 3.4
08_02_0112 + 12703687-12703915,12704182-12704209,12704999-127050... 29 4.5
08_02_1093 - 24271826-24273427 28 5.9
09_06_0342 + 22410674-22411060,22412219-22412299,22412376-224125... 28 7.8
09_02_0504 - 10013784-10014041,10014558-10014660,10014932-100150... 28 7.8
04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189 28 7.8
01_01_1159 + 9224331-9224473,9224586-9224727,9225412-9225483,922... 28 7.8
>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 33.1 bits (72), Expect = 0.21
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Frame = +2
Query: 146 NQTLDEDADIEKRYTPELTEELMSAKADALLLFTEYTAIAGEELKSFLMNVTAYSDDAIR 325
N+ L E I + +L+E +++ + L E+ + A +L SFL + + DDA +
Sbjct: 841 NEGLKEKLIIMAEESTKLSEIIVAKDVEIATLSEEWES-AIVDLTSFLTDGCSSLDDAYQ 899
Query: 326 NADNVITS-DYNSNCRSKFDSRIRTIQNDARRAAS-FSGENHHKFLLGHMIVMRMHLNKS 499
N DN+I+S YN++ S+ + + + + S E +G + ++H+ +
Sbjct: 900 NIDNMISSFPYNNHSVSEHVEKAMKVSIEKEKIISRLQIELQAAQRMGREVKEKLHILRG 959
Query: 500 ESL 508
+L
Sbjct: 960 ATL 962
>04_04_1351 - 32827136-32827984
Length = 282
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 659 ALGPCRSGGSAACPPGRGGSPPELG 585
A G C SGGS + P G GGS P G
Sbjct: 17 ACGSCGSGGSGSAPSGGGGSAPSGG 41
>03_06_0522 -
34494989-34495045,34495171-34495234,34495378-34495494,
34495878-34496032,34496221-34496319,34496464-34496593,
34496727-34496866,34497050-34497239,34497346-34497547,
34497589-34497631
Length = 398
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +2
Query: 194 ELTEELMSAKADALLLFTEYTAIAGEELKSFLMNVTAYSDDAIRNADNVITSDYNSNCRS 373
+L +++SA + +L EY I EE KS +V A A++NAD + + +
Sbjct: 8 DLRSDMVSAASMSLDYRPEYDDI--EEAKSPNTSVAAV---AVKNADASVYKIIHGFLKQ 62
Query: 374 KFDSRIRTIQNDARRAAS 427
K +S I+ N AR+AAS
Sbjct: 63 KNNSIIKVAANVARKAAS 80
>03_01_0202 +
1605703-1606402,1606681-1606824,1606911-1607063,
1607236-1607351,1607737-1607904,1607990-1608214,
1608711-1608833
Length = 542
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 518 CTKAVRDCGISCETIPRVKRWRRQALEEIHRVREDMQH 631
CT+ C +C+TIP+ K ++ +E++ R + M H
Sbjct: 96 CTEINTGCEYACKTIPKRKLITKEDVEDVRREIQIMHH 133
>12_02_0335 - 17669232-17670063,17670619-17672150
Length = 787
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 239 AVEHPPSLTSTPRSALECTASLCQRLRPGSGCFDRSRPPIENPENELS 96
A H P + P + C +S CQ + CF +RPP+ P S
Sbjct: 571 AANHQPRKLAGPCAESSCISSSCQPSCAQTSCF-MARPPLPKPRKPKS 617
>08_02_0482 - 17643603-17643955,17644024-17646604
Length = 977
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 632 SAACPPGRGGSPPELGVSSASLEVLSRKRCRNLSPLWCTSSPG 504
+AA G GG A + L R R +N+ LWC+ S G
Sbjct: 715 AAAMEAGGGGGGGGKDTFEAEVATLGRIRHKNIVKLWCSLSSG 757
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 581 SSASLEVLSRKRCRNLSPLWCTSSPGIHS 495
S+ L+VLS + CR P+ CTS IHS
Sbjct: 283 STPQLQVLSLRHCRLFGPI-CTSLSSIHS 310
>08_02_0112 +
12703687-12703915,12704182-12704209,12704999-12705050,
12707604-12707672,12707764-12707889,12708206-12708256,
12709763-12709840,12710613-12710715,12710794-12710828,
12710916-12711362
Length = 405
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 479 RMHLNKSESLVKKCTKAVRDCGISCETIPRVKRWRRQALEEIHRVREDMQHSRRS 643
R ++K +S K KA R+ E KR R+Q ++ H ++ED + ++ S
Sbjct: 277 RAKISKEQS---KSNKAAREVDDDEEEAKPAKRGRKQLVKATHEIQEDEEDTKES 328
>08_02_1093 - 24271826-24273427
Length = 533
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 37 AVHDGSAGMYLVPSATDVRTDSSFSGFSMGGRDRS 141
A+ DG + +VPS+ D T SGF G R R+
Sbjct: 201 AIADGERKVSVVPSSPDNDTKYHISGFGYGPRTRT 235
>09_06_0342 +
22410674-22411060,22412219-22412299,22412376-22412579,
22412765-22412959,22413064-22413228,22413501-22413761,
22413908-22414126,22414285-22414504,22414591-22414613,
22414728-22414766
Length = 597
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 382 FPHSHDPE*RPPRGQLQRREPSQVPTRPHDRD 477
FP S +PP Q Q + P +P RP +RD
Sbjct: 111 FPSSSSSVSQPPPTQQQLQVPDLLPPRPPERD 142
>09_02_0504 - 10013784-10014041,10014558-10014660,10014932-10015093,
10015416-10015549,10015633-10015716,10015839-10016129,
10016362-10016694,10016823-10016965,10017273-10017429,
10017513-10017616,10017728-10017888,10017971-10018287,
10018396-10018677,10018759-10019226,10019338-10019391,
10019689-10019742,10019943-10020021,10020108-10020196,
10021153-10021273,10022321-10022637
Length = 1236
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = -2
Query: 409 VILDRANAGIEFRSTIGVIIRGNNIVSVPYGIIGVGCDIHQERLQFFASYSRVFSEEQ 236
+ +D +G++ R+ V+ N V ++ C IHQ ++ F S+ +F +Q
Sbjct: 942 IFMDEPTSGLDARAAAIVMRAIRNTVDTGRTVV---CTIHQPSIEIFESFDELFLMKQ 996
>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
Length = 470
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 494 KSESLVKK-CTKAVRDCGISCETIPRVKRWRRQALEEIHRVREDMQ 628
KS+ V+K CT+ +R G + +K+ +A EE+ + RE +Q
Sbjct: 221 KSKGRVEKICTELIRGIGEDKAEVEALKKETEKAQEELQKEREMLQ 266
>01_01_1159 +
9224331-9224473,9224586-9224727,9225412-9225483,
9225853-9225933,9226031-9226144,9226770-9226826,
9227209-9227310,9227617-9227767,9227851-9227927,
9228721-9228828,9229684-9229754,9230546-9230687,
9230903-9231001,9231112-9231240,9231445-9231559,
9231786-9231853,9233410-9233523,9233587-9233703,
9234079-9234132,9234221-9234326,9235272-9235402,
9235489-9235557
Length = 753
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 403 LDRANAGIEFRSTIGVIIRGNNIVSVPYGIIGVGCDIHQE 284
+D A AG + + + VI+ G+N VSV G+ DIH +
Sbjct: 155 VDEAQAG--YATKVDVILHGDNSVSVTDNGRGIPTDIHPQ 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,196,440
Number of Sequences: 37544
Number of extensions: 422468
Number of successful extensions: 1802
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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