Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6a18
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          26   0.28 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          25   0.66 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          25   0.66 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          25   0.66 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.66 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    25   0.66 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.87 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          24   1.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.1  

>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 464 HMIVMRMHLNKSESLVKKCTKAVRDCGISCETIPRVKRWRRQALEEIHRVREDMQH-SRR 640
           H  V+ +++ KSE+  K C K      IS  ++ R +    Q     H   ED++H  R 
Sbjct: 189 HRTVLAVNIEKSENETKTCKK----YAISSNSL-RSRSRSFQRTSSCHSRYEDLRHEDRN 243

Query: 641 SYKD 652
           SY++
Sbjct: 244 SYRN 247


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 464 HMIVMRMHLNKSESLVKKCTKAVRDCGISCETIPRVKRWRRQALEEIHRVREDMQH-SRR 640
           H  V+ +++ KSE+  K C K      IS  ++ R +    Q     H   ED +H  R 
Sbjct: 189 HRTVLAVNIEKSENETKTCKK----YAISSNSL-RSRSRSFQRTSSCHSRYEDSRHEDRN 243

Query: 641 SYKD 652
           SY++
Sbjct: 244 SYRN 247


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 464 HMIVMRMHLNKSESLVKKCTKAVRDCGISCETIPRVKRWRRQALEEIHRVREDMQH-SRR 640
           H  V+ +++ KSE+  K C K      IS  ++ R +    Q     H   ED +H  R 
Sbjct: 189 HRTVLAVNIEKSENETKTCKK----YAISSNSL-RSRSRSFQRTSSCHSRYEDSRHEDRN 243

Query: 641 SYKD 652
           SY++
Sbjct: 244 SYRN 247


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 464 HMIVMRMHLNKSESLVKKCTKAVRDCGISCETIPRVKRWRRQALEEIHRVREDMQH-SRR 640
           H  V+ +++ KSE+  K C K      IS  ++ R +    Q     H   ED +H  R 
Sbjct: 189 HRTVLAVNIEKSENETKTCKK----YAISSNSL-RSRSRSFQRTSSCHSRYEDSRHEDRN 243

Query: 641 SYKD 652
           SY++
Sbjct: 244 SYRN 247


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 464 HMIVMRMHLNKSESLVKKCTKAVRDCGISCETIPRVKRWRRQALEEIHRVREDMQH-SRR 640
           H  V+ +++ KSE+  K C K      IS  ++ R +    Q     H   ED +H  R 
Sbjct: 189 HRTVLAVNIEKSENETKTCKK----YAISSNSL-RSRSRSFQRTSSCHSRYEDSRHEDRN 243

Query: 641 SYKD 652
           SY++
Sbjct: 244 SYRN 247


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 464 HMIVMRMHLNKSESLVKKCTKAVRDCGISCETIPRVKRWRRQALEEIHRVREDMQH-SRR 640
           H  V+ +++ KSE+  K C K      IS  ++ R +    Q     H   ED +H  R 
Sbjct: 189 HRTVLAVNIEKSENETKTCKK----YAISSNSL-RSRSRSFQRTSSCHSRYEDSRHEDRN 243

Query: 641 SYKD 652
           SY++
Sbjct: 244 SYRN 247


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 19  SHLNTSAVHDGSAGMYLVPSATDV 90
           SHLN S+ H    G+Y   +A+ V
Sbjct: 454 SHLNISSTHTNDGGLYKCIAASKV 477


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 464 HMIVMRMHLNKSESLVKKCTKAVRDCGISCETIPRVKRWRRQALEEIHRVREDMQH-SRR 640
           H  V+ +++ KSE+  K C K      IS  ++    R   Q     H   ED +H  R 
Sbjct: 189 HRTVLAVNIEKSENETKTCKK----YAISSNSLGSRSR-SFQRTSSCHSRYEDSRHEDRN 243

Query: 641 SYKD 652
           SY++
Sbjct: 244 SYRN 247


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 464 HMIVMRMHLNKSESLVKKCTKAVRDCGISCETIPRVKRWRRQALEEIHRVREDMQH-SRR 640
           H  V+ +++ KSE+  K C K      IS  ++ R +    Q     H   ED +H    
Sbjct: 189 HRTVLAVNIEKSENETKTCKK----YAISSNSL-RSRSRSFQRTSSCHSRYEDSRHEDGN 243

Query: 641 SYKD 652
           SY++
Sbjct: 244 SYRN 247


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 641 SGGSAACPPGRGGSPPELGVSSASLEVLS 555
           SGGS       GG    LG++S    +LS
Sbjct: 35  SGGSIVVGANNGGGGGGLGIASGLSAMLS 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,111
Number of Sequences: 438
Number of extensions: 3951
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)