Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6a13
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    30   0.29 
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    28   0.87 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    28   1.2  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    28   1.2  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    28   1.2  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    27   1.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.0  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.7  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   3.5  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   3.5  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   3.5  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    26   4.7  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   6.2  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   6.2  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   6.2  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   8.1  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   8.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   8.1  

>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
 Frame = +3

Query: 291 NQMPQTVP--RSGCSPPSASQGER----AVPTSPADLQHLLRLLGASSPPESMLHSP--- 443
           +Q P + P  +   SP +  Q  R    +V  +PA +  +      S   +  L  P   
Sbjct: 39  SQQPPSTPNGKEAASPSALKQNVRPSLNSVQQTPASIDAVASSSNVSLQSQQPLSKPVVS 98

Query: 444 --PNLHTKPPPPYPEDNNFLDRLYDFEGYPTPSPSSDEGSIPTVALQPS 584
             PN  T  PPP    +  +    +     +P+P++    +P+ ++ PS
Sbjct: 99  SKPNQTTAMPPPSNNPSRHVSSTSNKPAAVSPNPAAHHAELPSGSVPPS 147


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 495 LDRLYDFEGYPTPSPSSDEGSIPTVALQPS 584
           +++ YD    PTP+  ++  S+P +A  P+
Sbjct: 588 MEKQYDLHRLPTPTSQTESASVPQIANPPN 617


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 363 PTSPADLQHLLRLLGASSPPESMLHSPP 446
           P  P   +H     G  SPP  +LHSPP
Sbjct: 211 PMEPPKFRHKKVPRGPPSPPPPVLHSPP 238


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 26/91 (28%), Positives = 35/91 (38%)
 Frame = +3

Query: 306 TVPRSGCSPPSASQGERAVPTSPADLQHLLRLLGASSPPESMLHSPPNLHTKPPPPYPED 485
           +VPR    PP   +G+  +P  P     +     A  P  +   +P    T P PP   +
Sbjct: 250 SVPRLPHDPPDL-EGDDNIPDLPKRPASI-----APQPTGASTIAPQPTGTSPSPPV--E 301

Query: 486 NNFLDRLYDFEGYPTPSPSSDEGSIPTVALQ 578
            NF D       Y  P P  D  S PT+  Q
Sbjct: 302 MNFPDTSDITPAYSEPEPIQDFWSDPTLDQQ 332


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +3

Query: 384 QHLLRLLGASSPPESMLHSPPNLHTKPPPPYPEDNNFL---DRLYDFEGYPTPSPSSDEG 554
           Q +L LL   + P+S +  PP  +    PP    N+ L   +  +D   Y    P +   
Sbjct: 296 QKILHLLNEGNEPKSPIQLPPVSNLPLNPPIQSSNSRLSHDNNSFDPFAYLGLDPKNPSA 355

Query: 555 SIPTVALQ 578
           S P V  Q
Sbjct: 356 SFPRVVSQ 363


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 522 ILQNRTACPRSYYPLDMVAEVLC--VGSVESGAWILAATRPLINGAGAVDQLETWGQLSR 349
           I+ + +A P    P+++  + +   +  +   +W    ++P +NGA + D +  WG    
Sbjct: 449 IMSDISAIPWIDEPVEVETKTIAKYLLKLNGNSWWTVGSQPAVNGAPSADPVFGWGPKGG 508

Query: 348 LVMLKA 331
            V  KA
Sbjct: 509 RVFQKA 514


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 1/110 (0%)
 Frame = +3

Query: 153 ARAAVSKSHPSWLSLCSPTCPGETGKASGPPVILQS*KYHGEDFYCNQMPQTV-PRSGCS 329
           A +A +   PS   + +PT        S PP    S +          +P    P     
Sbjct: 139 ASSAPASQEPSASGVNAPTVSAPNSMVSPPP----SFQPPSAAAPATSLPSDYNPPPPPP 194

Query: 330 PPSASQGERAVPTSPADLQHLLRLLGASSPPESMLHSPPNLHTKPPPPYP 479
           PP A + + A    P D     R +    PP         L   PPPP P
Sbjct: 195 PPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 429 MLHSPPNLHTKPPPPYPEDNNFLDRLYDFEGYPTPSPSSD 548
           +L S PN +    PP  + + +L+   D    P PS SSD
Sbjct: 220 LLKSYPNAYVPRLPPKDDHDTYLNSSEDSTLSPLPSRSSD 259


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 330 PPSASQGERAVPTSPADLQHLLRLLGASSPPESMLHSPPNLHTKPP--PPYPED 485
           PP +    ++    PA++  L   L AS  P S L  P  +  + P   PYP D
Sbjct: 81  PPVSHTSHKSRRQYPAEVFELTNTLAASPAPPS-LSEPSYVMARTPSSSPYPHD 133


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 24/93 (25%), Positives = 37/93 (39%)
 Frame = +3

Query: 306 TVPRSGCSPPSASQGERAVPTSPADLQHLLRLLGASSPPESMLHSPPNLHTKPPPPYPED 485
           + P SG  PPS S    A P +PA          +++P  +   S    +   P PYP  
Sbjct: 56  SAPPSG-PPPSYSNS--AAPATPA------ASASSAAPAPAPAASQNRAYGAAPQPYPPQ 106

Query: 486 NNFLDRLYDFEGYPTPSPSSDEGSIPTVALQPS 584
             +  + Y +   P   P+    + P  A QP+
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYA-QPA 138


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 138 VSFGGARAAVSKSHPSWLSLCSPTCPGETGKASGPPVILQS*KYHGED 281
           ++FG A  A +  + S+  L S     E  K  GP V+L    YH  D
Sbjct: 580 MNFGNAYVASTALYSSYTQLISALL--EADKFKGPSVVLAYLPYHSAD 625


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 427 PCSTLHRTYTQNLRHHIQRIITSWTGCTILKDIL-PRLLRQTKARFPRW--RCNHL 585
           P  + +RTYT  L H I R   ++    +  DIL PR     +A+  R+  +  HL
Sbjct: 256 PQRSCYRTYTTELTHEIVRKNLAFAPHMLAGDILSPRYCPSLEAKVTRFPHKARHL 311


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 411 SSPPESMLHSPPNLHTKPPPPYPEDNNFLDRLYD 512
           S  P   + S P +H  PPPP P++ + ++  +D
Sbjct: 259 SESPRRSVSSTPPVH--PPPPVPQNLSAVNEEFD 290


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 297 MPQTVP-RSGCSPPSASQGERAVPT--SPADLQHLLRLLGASSPPESMLHSPPNLHTKPP 467
           +P T+  RSG S PS+S    AVP+  S   LQ     L  S+P      S  ++ +  P
Sbjct: 65  VPDTLSVRSGFSIPSSSHHPSAVPSLLSQHRLQQPQPRLYPSAPLNYYWPSYQSVPSAAP 124

Query: 468 PPYPEDNNFL 497
           PP P    ++
Sbjct: 125 PP-PSQQRYM 133


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 471 PYPEDNNFLDRLYDFEGYPTPSPSSDE 551
           P+     FL+ LY+   Y +P PSS E
Sbjct: 66  PFDPCRTFLEALYEKYSYSSPLPSSVE 92


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 423 ESMLHSPPNLHTKPPPPYPEDNNFL 497
           +SM  +P N H  P   Y ED NF+
Sbjct: 189 DSMEFNPKNFHEIPFVDYSEDINFI 213


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +3

Query: 264 KYHGEDFYCNQMPQTVPRS--GCSPPSASQGERAVPTSPADLQHLLRLLGA---SSPPES 428
           K +G ++  +Q+    P      S PSAS    + PT  A        + +   SSPP S
Sbjct: 298 KENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVSSEVVSSPPTS 357

Query: 429 MLHSP 443
            LHSP
Sbjct: 358 PLHSP 362


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = +3

Query: 414  SPPESMLHSPPNLHTKPPPPYP---EDNNFLDRLYDFEG-YPTPSPSSDEGSIPTVALQP 581
            S P +   S P+    PPPP P   E  +    LYDF G  P       +  I  V  +P
Sbjct: 1081 SAPVANNVSKPSAVPPPPPPPPAEVEKKDLYLALYDFAGRSPNEMTIKKDEIIEIVQKEP 1140

Query: 582  S 584
            S
Sbjct: 1141 S 1141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,579
Number of Sequences: 5004
Number of extensions: 53523
Number of successful extensions: 179
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)