Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6a13
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     28   0.059
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.10 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    27   0.14 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   1.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   3.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.9  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 0.059
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 318 SGCSPPSASQGERAVPTSPADLQHLLRLLGA--SSPPESMLHSPPNLHTKPPPPYPEDNN 491
           SG S PS        P S + +Q L   +    +SP E  L++P  + ++P P YP  ++
Sbjct: 388 SGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALIQSQPSPQYPSTSS 447

Query: 492 FL 497
            +
Sbjct: 448 HI 449


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
 Frame = +3

Query: 384 QHLLRLLGAS-SPPESMLH----SPPNLHTKPPPPYPED-NNFLDRLY----DFEGYPTP 533
           QH    +G +  PP    H    S  +LH + PP   E  +++++ +Y     F    TP
Sbjct: 337 QHGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCTP 396

Query: 534 SPSSDEGSIPTVALQ 578
           SP    G +PT  +Q
Sbjct: 397 SPPRGPGGVPTSVIQ 411


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 156 ERLRRRPNNSRVANSQLLLNTKP*FTY--FNVKNKFNNKLYYSN 31
           ER R R    R    +++ +    + Y  +N  N +N KLYY N
Sbjct: 65  ERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNYNKKLYYKN 108


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 396 RLLGASSPPESMLHSPPNLHTKPPP 470
           RLLG + P E ++H P +    P P
Sbjct: 19  RLLGWNVPAEELIHIPEHWLVYPEP 43


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 156 ERLRRRPNNSRVANSQLLLNTKP*FTYFNVKNKFNNKLYYSN 31
           ER + R   S ++N+    N    + Y    N +N KLYY N
Sbjct: 307 ERSKERKIISSLSNNYNYNNNNYKYNY----NNYNKKLYYKN 344


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -2

Query: 156 ERLRRRPNNSRVANSQLLLNTKP*FTYFNV----KNKFNNKLYYSN 31
           ER R     S ++N  +  N    + Y N      N +N KLYY N
Sbjct: 74  ERSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKN 119


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 460 FVCRFGGEWSMDSGG 416
           F+C+  G+W + SGG
Sbjct: 232 FLCKGDGKWYLPSGG 246


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 72  NVKNKFNNKLYYSN 31
           N  N +N KLYY N
Sbjct: 336 NNYNNYNKKLYYKN 349


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 521 ISYPVSFVRRRLDSHGGAA 577
           +SYP   VRRR+    G A
Sbjct: 229 VSYPFDTVRRRMMMQSGRA 247


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 521 ISYPVSFVRRRLDSHGGAA 577
           +SYP   VRRR+    G A
Sbjct: 229 VSYPFDTVRRRMMMQSGRA 247


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 414 SPPESMLHSPPNLHTKPPPPYP 479
           SP      SPPN    PPP  P
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGP 51


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 433 SMDSGGDEAPNKRSRCCRS 377
           S D GG  +PN   R C S
Sbjct: 575 SNDEGGKTSPNSAVRKCMS 593


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 429 MLHSPPNLHTKPPPPYPEDNNFLDRLYDFEGYPTPS 536
           ++H PP    +P     E N  +      +G PTP+
Sbjct: 701 VVHVPPRWIVEPTDVSVERNKHVALHCQAQGVPTPT 736


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,770
Number of Sequences: 438
Number of extensions: 4311
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)