Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6a08
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    30   0.35 
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    28   1.1  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    27   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   4.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   4.3  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   5.6  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   5.6  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    25   7.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   7.5  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   7.5  
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.5  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   7.5  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   9.9  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   9.9  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    25   9.9  

>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 150 QTHVNNGFDMSSENPPTDRDPSLNRPGSPKPKRSTKPDLPPPALKVPVNEKKAFEDIEGA 329
           Q   +NG ++ SE P  D+   +N    P      + D+  PA +VP  E    E++E  
Sbjct: 72  QGQSSNGSEIKSERPSIDKKLDVNIDSHPIEPPPFEHDIGLPASQVPAAE----EEVEST 127

Query: 330 PE 335
           P+
Sbjct: 128 PK 129


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 510 CVLGQFSSRNSVKVWSLSPAMKGTG-YAQALGCGYILSYYVV 632
           C LG+    ++V +W + P     G +AQ LG   ++   VV
Sbjct: 214 CTLGEVKKGDTVAIWGMGPIGLYAGRWAQILGASKVIGIEVV 255


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 201 DRDPSLNRPGSPKPKRSTKPDLPPPALKVPVNEKKAF 311
           + DPSLN P S K  +S K  +PP +  +PV    AF
Sbjct: 92  EEDPSLNAPFSEK-NQSVK--IPPHSPTLPVQNASAF 125


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 183  SENPPTDRDPSLNRPGSPKPKRSTKPDLPPPALKVP 290
            SE PP  + PS+  P  P P  ST P +P P+  +P
Sbjct: 1195 SEAPPVPK-PSVGVPPVPPP--STAPPVPTPSAGLP 1227


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 180 SSENPPTDRDPSLNRPGSPKPKRSTKPDLPPPALKVP 290
           S   PPT   P   RP  P P  ++ P +P  A  +P
Sbjct: 135 SELRPPTSAPP---RPSIPPPSPASAPPIPSKAPPIP 168


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = +3

Query: 141 NMSQTHVNNGFDMSSENPPTDRDPSLNRPGS-PKPKRSTKPDLPPPALKVP 290
           N  +  + NG   SS  PP    P  N  GS P P +      PPP    P
Sbjct: 321 NRGKPPIGNGSSNSS-LPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 159 VNNGFDMSSENPPTDRDPSLNRPGSPKPKRSTKPDLPPPALKVPVNEK-KAFEDIEGAP 332
           ++N       + P   DP+   PG+PK    +K +  P ++   ++EK KA +D +  P
Sbjct: 12  LSNAVQAGQSSDPMQDDPAKTEPGTPKGYDGSK-NSSPASVPSWIHEKTKAGKDRKRLP 69


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 483 VGKPMYYLECVLGQFSSRNSVKVWSLSPAMKG 578
           VGK   Y+ CV   F S  S   W +   +KG
Sbjct: 324 VGKMKSYIACVNVNFESARSEDYWDIQLNVKG 355


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 282 SVPEEVDQVLWIASAWVILDDSMTGPCPSEDSPR 181
           SVP  V QV W  + + ++   + G   S D PR
Sbjct: 296 SVPSAVKQVFWRIAIFYVVSLILIGLLVSPDDPR 329


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 171 FDMSSENPPTDRDPSLNRPGS 233
           FD  S N P D DP L  PG+
Sbjct: 125 FDDFSPNNPLDTDPFLTSPGN 145


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
 Frame = +3

Query: 147 SQTHVNNGFDMSSENPPTDRDPSLNRPGSPKPKRST----KPDLPPPA---LKVPVNEKK 305
           S  H+   FD  +ENP   +  S++      P  S      PD  PPA     VP N   
Sbjct: 304 SDGHLAPAFDFLNENPIWSKRFSISSIKYSAPSTSNASNIAPDSAPPASSQFSVPFN--A 361

Query: 306 AFEDIEGAPERMM 344
           A E+I   P+ ++
Sbjct: 362 AAENINDTPDSVL 374


>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 135 LINMSQTHVNNGFDMSSENPPTDRDPSLNRPGSPKPKRSTK 257
           L+ ++   VNN   MSS++   + D S N+  S   + S K
Sbjct: 65  LVELAHARVNNDLQMSSQSANKNDDNSNNQNPSNNKEMSDK 105


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 304 FFSLTGTFSAGGGRSGFVDRFGLGDPGRF 218
           FFS  GTF  GGG    V +FG G P  F
Sbjct: 223 FFSGPGTFFFGGGPGIRVHQFG-GRPRNF 250


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 93  QSTIIKHFFN*SSVLINMSQTHVNNGFDMSSENPPTDRDPSLNRPGSPKPK 245
           QST  K+    ++ + + ++   +NGF  +S +PP   D + ++ GS  P+
Sbjct: 336 QSTTNKNDSLRNTAVESSTEPSTSNGFPATSVSPPLTIDLTNSQTGSDGPQ 386


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 177 MSSENPPTDRDPSLNRPG 230
           + + N P D DP+L RPG
Sbjct: 517 IGATNRPNDLDPALRRPG 534


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 SVKVWSLSPAMKGTGYAQALGCGYILSYYVVI 635
           SV  W++ PA+   G+  AL    + S Y VI
Sbjct: 27  SVNKWTILPALWVGGFLSALDMTIVASLYPVI 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,844
Number of Sequences: 5004
Number of extensions: 68310
Number of successful extensions: 198
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)