Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6a07
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    26   4.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   4.0  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    26   5.3  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   9.3  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   9.3  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   9.3  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   9.3  

>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 222 YAGWSCLFSFFIPLRMP 272
           Y GWSCL  F+    MP
Sbjct: 364 YNGWSCLDKFYTAFEMP 380


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 519 TKPSQNMSWGTENTFSHAPAQVP-NAPSIVVTRRPALSKSQLAGKIRGI 376
           T  SQN      N  +H P  +P  A   VVT RP  + SQL   +R I
Sbjct: 503 TDESQNTENVDYNPQTHTPVPIPTTATQDVVTIRPEFN-SQLLNNLRQI 550


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 222 YAGWSCLFSFF 254
           Y GW+C FSFF
Sbjct: 463 YLGWNCTFSFF 473


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 203 LHFPFYSVNLKPFLFRLSHP*RYRLLLNSFVQSFLLYLWKHLF 75
           L  PF++++L PFL ++     + LL N  ++  L + + +LF
Sbjct: 113 LLLPFFTLDLLPFLNKVCECCNHMLLDNPKIKQDLPFAFCYLF 155


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 215 TRCILHFPFYSVNLKPFLFRLSHP*RYRLLLNSFVQSFLLYLWKHLFIVN 66
           T  +LH  F   N + F  +LS      L LN+F   F LYL     I+N
Sbjct: 138 TLSMLHKSFNLHNFQSFYQKLSLDSSLILALNNFWSFFNLYLTNSPHIMN 187


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 323 GVPSIMVYWT---SMVYMVTYIPLIFPASWLLDKAGLRVT 433
           G PSI V+WT    + Y      +I   S+ L+K G  ++
Sbjct: 217 GAPSIFVHWTYIQKLFYQTITYQIISRTSYSLNKYGENIS 256


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 557 LNVPPRLAAVWFGGRSSVVRLQYRR 631
           LN+P R   +WF  R +  +L  RR
Sbjct: 203 LNIPERSVTIWFQNRRAKSKLISRR 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,585
Number of Sequences: 5004
Number of extensions: 66329
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)