Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6a07
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-9|AAV34797.1| 475|Caenorhabditis elegans Hypothetical ... 169 1e-42
AF002196-8|AAB53976.2| 586|Caenorhabditis elegans Hypothetical ... 169 1e-42
Z70203-1|CAA94104.1| 456|Caenorhabditis elegans Hypothetical pr... 79 4e-15
U23516-2|AAG38882.1| 507|Caenorhabditis elegans Hypothetical pr... 76 2e-14
Z92825-7|CAB07317.1| 487|Caenorhabditis elegans Hypothetical pr... 69 4e-12
Z81041-15|CAB02792.1| 487|Caenorhabditis elegans Hypothetical p... 69 4e-12
CU457741-8|CAM36349.1| 544|Caenorhabditis elegans Hypothetical ... 60 1e-09
AL132846-5|CAJ76972.1| 377|Caenorhabditis elegans Hypothetical ... 45 5e-05
Z92825-4|CAB07312.1| 467|Caenorhabditis elegans Hypothetical pr... 44 9e-05
Z70307-11|CAA94337.1| 488|Caenorhabditis elegans Hypothetical p... 40 0.002
U23516-1|AAL11101.1| 464|Caenorhabditis elegans Hypothetical pr... 33 0.17
AL032640-4|CAA21642.1| 369|Caenorhabditis elegans Hypothetical ... 29 2.1
U64846-7|AAG24116.2| 327|Caenorhabditis elegans Serpentine rece... 29 2.8
U64846-3|AAG24114.1| 327|Caenorhabditis elegans Serpentine rece... 29 2.8
U80448-7|AAB37820.1| 260|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 29 3.7
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 29 3.7
Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical pr... 28 4.9
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 4.9
AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine... 28 4.9
AF039037-5|AAC48228.3| 714|Caenorhabditis elegans Temporarily a... 28 4.9
AF125972-1|AAD14770.2| 349|Caenorhabditis elegans Hypothetical ... 28 6.5
>AF002196-9|AAV34797.1| 475|Caenorhabditis elegans Hypothetical
protein C09D4.1b protein.
Length = 475
Score = 169 bits (411), Expect = 1e-42
Identities = 74/136 (54%), Positives = 95/136 (69%)
Frame = +2
Query: 188 KKGNVEYIAYPIRWLVLFIFVFYSASNAFQWVQYSIIQDTVVKYYGVPSIMVYWTSMVYM 367
K+ +E + RW++L IF+F S SN QW+QYSII + + YY V V WTSM+YM
Sbjct: 27 KQEKIEPKVFRKRWVILVIFMFLSGSNGAQWIQYSIIANIISDYYKVSFQAVDWTSMIYM 86
Query: 368 VTYIPLIFPASWLLDKAGLRVTTILGAFGTCAGAWLKVFSVPQDMFWLGFVGQTVVAISQ 547
+TYI PA+WLLDK GLR++ +LGA G C GAW+K+ S D FW+ FVGQT+V SQ
Sbjct: 87 LTYILFFIPAAWLLDKWGLRLSVLLGALGNCVGAWIKLLSTHPDSFWVTFVGQTIVGASQ 146
Query: 548 VFILNVPPRLAAVWFG 595
+F L +PPRLAAVWFG
Sbjct: 147 MFTLGIPPRLAAVWFG 162
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 594 GADQVSSACSIGVFGN 641
G D+VS AC++GVFGN
Sbjct: 162 GPDEVSRACALGVFGN 177
>AF002196-8|AAB53976.2| 586|Caenorhabditis elegans Hypothetical
protein C09D4.1a protein.
Length = 586
Score = 169 bits (411), Expect = 1e-42
Identities = 74/136 (54%), Positives = 95/136 (69%)
Frame = +2
Query: 188 KKGNVEYIAYPIRWLVLFIFVFYSASNAFQWVQYSIIQDTVVKYYGVPSIMVYWTSMVYM 367
K+ +E + RW++L IF+F S SN QW+QYSII + + YY V V WTSM+YM
Sbjct: 138 KQEKIEPKVFRKRWVILVIFMFLSGSNGAQWIQYSIIANIISDYYKVSFQAVDWTSMIYM 197
Query: 368 VTYIPLIFPASWLLDKAGLRVTTILGAFGTCAGAWLKVFSVPQDMFWLGFVGQTVVAISQ 547
+TYI PA+WLLDK GLR++ +LGA G C GAW+K+ S D FW+ FVGQT+V SQ
Sbjct: 198 LTYILFFIPAAWLLDKWGLRLSVLLGALGNCVGAWIKLLSTHPDSFWVTFVGQTIVGASQ 257
Query: 548 VFILNVPPRLAAVWFG 595
+F L +PPRLAAVWFG
Sbjct: 258 MFTLGIPPRLAAVWFG 273
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 594 GADQVSSACSIGVFGN 641
G D+VS AC++GVFGN
Sbjct: 273 GPDEVSRACALGVFGN 288
>Z70203-1|CAA94104.1| 456|Caenorhabditis elegans Hypothetical
protein C05G5.1 protein.
Length = 456
Score = 78.6 bits (185), Expect = 4e-15
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Frame = +2
Query: 197 NVEYIAYPIRWLVLFIFVFYSASNAFQWVQYSIIQDTVVKYYGVPSIMVYWTSMVYMVTY 376
N +Y YP RW+ L + SN W+ Y+ I YY + +++ ++++MV
Sbjct: 7 NEDYRVYPKRWIYLLAVSMINFSNGNTWITYAAITFYTNNYYSNSNAALFF-NVIFMVLS 65
Query: 377 IPLIFPASWLLDKAGLRVTTILGAFGTCAGAWLKV-----FSVPQDMFWLGFVGQTVVAI 541
IP+ F A W +DK GLR +G + G +++ F P F + GQ V A
Sbjct: 66 IPVGFLACWWIDKFGLRSAYHIGTWANFIGNIIRLVASGTFIDPSLRFPIAITGQAVAAF 125
Query: 542 SQVFILNVPPRLAAVWFGGRSSVV 613
+Q F++ +P +LAA WF +
Sbjct: 126 AQPFVMFLPTKLAAYWFADNERAI 149
>U23516-2|AAG38882.1| 507|Caenorhabditis elegans Hypothetical
protein B0416.5a protein.
Length = 507
Score = 75.8 bits (178), Expect = 2e-14
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Frame = +2
Query: 200 VEYIAYPIRWLVLFIFVFYSASNAFQWVQYSIIQDTVVKYYGVPSIMVYWTSMVYMVTYI 379
++ Y RW+VL + +N W+ Y+ + V +YG S W SMVYM+ I
Sbjct: 37 IQLRVYKQRWIVLLAVALLNNTNTMSWIGYAPSGNYVNSFYGESSAA--WLSMVYMMCTI 94
Query: 380 PLIFPASWLLDKAGLRVTTILGAFGTCAGAWLKVFS----VPQDM-FWLGFVGQTVVAIS 544
P+ A W + GLR ++ + GA ++V S VPQD+ F + GQ + AI+
Sbjct: 95 PVGMFAMWAGREWGLRTAVLIAGWANGIGAVIRVISSLDFVPQDLRFPICMTGQGIAAIA 154
Query: 545 QVFILNVPPRLAAVWF 592
FI+ +P ++A WF
Sbjct: 155 YPFIMFLPTKVAGSWF 170
>Z92825-7|CAB07317.1| 487|Caenorhabditis elegans Hypothetical
protein C27A7.6 protein.
Length = 487
Score = 68.5 bits (160), Expect = 4e-12
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 11/158 (6%)
Frame = +2
Query: 158 EKGMALDSPSKKGNVEYIAYPIRWLVLFIFVFYSASNAFQWVQYSIIQDTVVKYY-GVP- 331
+K + + + +V Y YP RWLVL + F + SNA QW+ +S + D V YY G P
Sbjct: 13 DKDTSANEGISENSVIYKVYPARWLVLAVCCFLALSNAMQWISFSSLSDEVQIYYRGRPA 72
Query: 332 --SIMV-YWTSMVYMVTYIPLIFPASWLLDKAGLRVTTILGAFGTCAGAWLK-VFSVP-- 493
SI V T+ ++ + F ++ D G++ +LG GA ++ + S+P
Sbjct: 73 NGSIDVSLVTNQIFQFVAVFTGFGGMYITDNKGIKTAGLLGTTLNVIGASIRMIASIPFI 132
Query: 494 QDMF---WLGFVGQTVVAISQVFILNVPPRLAAVWFGG 598
+ F L G + A +Q F L +P ++A WF G
Sbjct: 133 KSHFVRECLLHAGSFIAASAQAFFLVLPSKIAECWFPG 170
>Z81041-15|CAB02792.1| 487|Caenorhabditis elegans Hypothetical
protein C27A7.6 protein.
Length = 487
Score = 68.5 bits (160), Expect = 4e-12
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 11/158 (6%)
Frame = +2
Query: 158 EKGMALDSPSKKGNVEYIAYPIRWLVLFIFVFYSASNAFQWVQYSIIQDTVVKYY-GVP- 331
+K + + + +V Y YP RWLVL + F + SNA QW+ +S + D V YY G P
Sbjct: 13 DKDTSANEGISENSVIYKVYPARWLVLAVCCFLALSNAMQWISFSSLSDEVQIYYRGRPA 72
Query: 332 --SIMV-YWTSMVYMVTYIPLIFPASWLLDKAGLRVTTILGAFGTCAGAWLK-VFSVP-- 493
SI V T+ ++ + F ++ D G++ +LG GA ++ + S+P
Sbjct: 73 NGSIDVSLVTNQIFQFVAVFTGFGGMYITDNKGIKTAGLLGTTLNVIGASIRMIASIPFI 132
Query: 494 QDMF---WLGFVGQTVVAISQVFILNVPPRLAAVWFGG 598
+ F L G + A +Q F L +P ++A WF G
Sbjct: 133 KSHFVRECLLHAGSFIAASAQAFFLVLPSKIAECWFPG 170
>CU457741-8|CAM36349.1| 544|Caenorhabditis elegans Hypothetical
protein C42C1.8 protein.
Length = 544
Score = 60.1 bits (139), Expect = 1e-09
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Frame = +2
Query: 224 RWLVLFIFVFYSASNAFQWVQYSIIQDTVVKYYGVPSIMVYWTSMVYMVTYIPLIFPASW 403
RW +L + SN W+ Y+ + + V YG S W SM+YM +P F +
Sbjct: 84 RWFLLVSVALLNFSNTCSWIAYAPVGNYVNALYGEESAA--WFSMIYMFVSVPFGFIGMY 141
Query: 404 LLDKAGLRVTTILGAFGTCAGAWLKVFSV-----PQDMFWLGFVGQTVVAISQVFILNVP 568
+ K L V I GA ++ S PQ+ F + +GQ++ A++ FI+ +P
Sbjct: 142 IGSKNTLNVPLIAACVLNAIGALIRALSTQPQVDPQNRFPICLLGQSIAAMAYPFIMFLP 201
Query: 569 PRLAAVWF 592
+++A F
Sbjct: 202 SKISATCF 209
>AL132846-5|CAJ76972.1| 377|Caenorhabditis elegans Hypothetical
protein Y43D4A.3a protein.
Length = 377
Score = 44.8 bits (101), Expect = 5e-05
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Frame = +2
Query: 158 EKGMALDSPSKKGNVEYIAYPIRWLVLFIFVFYSASNAFQWVQYSIIQDTVVKYYGVP-- 331
+K + + + +V Y YP RWLVL + F + SNA ++ Y G P
Sbjct: 13 DKDTSANGGISENSVIYKVYPARWLVLAVCCFLALSNA------------MIYYRGRPAN 60
Query: 332 -SIMV-YWTSMVYMVTYIPLIFPASWLLDKAGLRVTTILGAFGTCAGAWLK-VFSVP--Q 496
SI V T+ ++ + F ++ D G++ +LG GA ++ + S+P +
Sbjct: 61 GSIDVSLVTNQIFQFVAVFTGFGGMYITDNKGIKTAGLLGTTLNVIGASIRMIASIPFIK 120
Query: 497 DMF---WLGFVGQTVVAISQVFILNVPPRLAAVWFGG 598
F L G + A +Q F L +P ++A WF G
Sbjct: 121 SHFVRECLLHAGSFIAASAQAFFLVLPSKIAECWFPG 157
>Z92825-4|CAB07312.1| 467|Caenorhabditis elegans Hypothetical
protein C13C4.6 protein.
Length = 467
Score = 44.0 bits (99), Expect = 9e-05
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Frame = +2
Query: 203 EYIAYPIRWLVLFIFVFYSASNAFQWVQYSIIQDTVVKYYGVPS-----IMVYWTSMVYM 367
EY Y RW +L SN QWV +S D ++ P+ + ++ +Y
Sbjct: 9 EYRVYKERWFILLATTALICSNIMQWVSFSAQIDQTNMFFCGPNEYKNCSAAFLSNQIYQ 68
Query: 368 VTYIPLIFPASWLLDKAGLRVTTILGAFGTCAGAWLK-VFSVP--QDMFWLGF---VGQT 529
+ + + + G T L A GA ++ + S+P Q+ FW F +G +
Sbjct: 69 IVAVIVSIIGMYFATVFGTLPTLRLSAVFNIVGAAIRLIASLPSLQNFFWRQFLMIIGTS 128
Query: 530 VVAISQVFILNVPPRLAAVWF 592
+ A +Q++ + V ++A WF
Sbjct: 129 IAAAAQMYFV-VFSKIAESWF 148
>Z70307-11|CAA94337.1| 488|Caenorhabditis elegans Hypothetical
protein C39E9.10 protein.
Length = 488
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = +2
Query: 308 VVKYYGVPSIMVYWTSMVYMVTYIPLIFPASWLLDKAGLRVTTILGAFGTCAGAWLKVFS 487
V YY + + V++++++ +L D+ + I+G G GA L
Sbjct: 35 VQTYYNISDSLGGLIQTVFLISFMVFSPVCGYLGDRFNRKWIMIIGV-GIWLGAVLGSSF 93
Query: 488 VPQDMFWLGFVGQTVVAISQVFILNVPPRLAAVWFGG--RSSVVRLQY 625
VP + FWL V ++ V I + NV P L + F G RS+V + Y
Sbjct: 94 VPANHFWLFLVLRSFVGIGEASYSNVAPSLISDMFNGQKRSTVFMIFY 141
>U23516-1|AAL11101.1| 464|Caenorhabditis elegans Hypothetical
protein B0416.5b protein.
Length = 464
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Frame = +2
Query: 464 GAWLKVFS----VPQDM-FWLGFVGQTVVAISQVFILNVPPRLAAVWF 592
GA ++V S VPQD+ F + GQ + AI+ FI+ +P ++A WF
Sbjct: 80 GAVIRVISSLDFVPQDLRFPICMTGQGIAAIAYPFIMFLPTKVAGSWF 127
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = +2
Query: 200 VEYIAYPIRWLVLFIFVFYSASNAFQWVQYSIIQDTVVKYYGVPSIMVYWTSMVYM 367
++ Y RW+VL + +N W+ Y+ + V +YG+ +++ +S+ ++
Sbjct: 37 IQLRVYKQRWIVLLAVALLNNTNTMSWIGYAPSGNYVNSFYGIGAVIRVISSLDFV 92
>AL032640-4|CAA21642.1| 369|Caenorhabditis elegans Hypothetical
protein Y43F8A.4 protein.
Length = 369
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 203 EYIAYPIRWLVLFIFVFYSASNAFQWVQYSIIQDTVVKYYGVPSIMVYWTS 355
E++AY I W+V + +AF V ++I+ V+KY +I VY T+
Sbjct: 106 EFLAYYI-WIVTIFKDVFRRVSAFSGVSLALIRYLVMKYGARTNIRVYVTT 155
>U64846-7|AAG24116.2| 327|Caenorhabditis elegans Serpentine
receptor, class t protein37 protein.
Length = 327
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 227 SVWGTRCILHFPFYSVNLKPFLFRLSHP*RYRLLLNSFVQSFLL 96
S+ C+L+ PFY + K SH + L F+QS L+
Sbjct: 206 SIVAITCVLYIPFYEIVRKRLKDAHSHSRAQNMKLQVFIQSVLI 249
>U64846-3|AAG24114.1| 327|Caenorhabditis elegans Serpentine
receptor, class t protein36 protein.
Length = 327
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 227 SVWGTRCILHFPFYSVNLKPFLFRLSHP*RYRLLLNSFVQSFLL 96
S+ C+L+ PFY + K SH + L F+QS L+
Sbjct: 206 SIVAITCVLYIPFYEIVRKRLKDAHSHSRAQNMKLQVFIQSVLI 249
>U80448-7|AAB37820.1| 260|Caenorhabditis elegans Hypothetical
protein F59A3.7 protein.
Length = 260
Score = 28.7 bits (61), Expect = 3.7
Identities = 29/99 (29%), Positives = 47/99 (47%)
Frame = +2
Query: 194 GNVEYIAYPIRWLVLFIFVFYSASNAFQWVQYSIIQDTVVKYYGVPSIMVYWTSMVYMVT 373
G+VE + I ++ IF F+ + + + +I T + ++ + V TS VY+ T
Sbjct: 116 GSVETF-HSIITILHSIFQFFISIILIRMSFWYVIVLTHICHFELQKSKVVDTSSVYLPT 174
Query: 374 YIPLIFPASWLLDKAGLRVTTILGAFGTCAGAWLKVFSV 490
Y+P PAS L TT L TC W++V +V
Sbjct: 175 YLPSYKPASCL--------TTYL---KTCQRKWMQVAAV 202
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = -1
Query: 596 PQTTRPPAAEVRLG*TPARWPPPFDPRSPARTCLGARRTPSAMLRRRYRTHQVSLSPADP 417
P +PP +V + +P+ PPP P P +G +R P R QV ++ P
Sbjct: 1157 PNLVKPPPVQV-VAPSPSVIPPPILPPPPPAGVIGQQRNPIGGAR------QVPVAAEAP 1209
Query: 416 LYPRAS*PERSGVYKSPCRP 357
A+ P R+ V + P P
Sbjct: 1210 --AAAAAPSRARVPRGPSPP 1227
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = -1
Query: 596 PQTTRPPAAEVRLG*TPARWPPPFDPRSPARTCLGARRTPSAMLRRRYRTHQVSLSPADP 417
P +PP +V + +P+ PPP P P +G +R P R QV ++ P
Sbjct: 1157 PNLVKPPPVQV-VAPSPSVIPPPILPPPPPAGVIGQQRNPIGGAR------QVPVAAEAP 1209
Query: 416 LYPRAS*PERSGVYKSPCRP 357
A+ P R+ V + P P
Sbjct: 1210 --AAAAAPSRARVPRGPSPP 1227
>Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical
protein F28F8.1 protein.
Length = 510
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 147 SITLPLTSKFFCSVIFIIFMEAF 79
S +PL K++ +IF+IFM AF
Sbjct: 298 SEVIPLIGKYYIGLIFLIFMAAF 320
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = -1
Query: 614 GRHLIGPQTTRPPAAEVRLG*TPARWPPPFDPRSPARTCLGARR---TPSAMLRRRYRTH 444
G H P PP G +P PPP PR+P RR TP + RR RT
Sbjct: 116 GDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRT- 174
Query: 443 QVSLSPADP 417
S P +P
Sbjct: 175 PPSPEPRNP 183
>AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine
receptor, one ofnine alpha a7-like nicotinic
acetylcholine receptor subunits(58.6 kD) (acr-18)
protein.
Length = 510
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 147 SITLPLTSKFFCSVIFIIFMEAF 79
S +PL K++ +IF+IFM AF
Sbjct: 298 SEVIPLIGKYYIGLIFLIFMAAF 320
>AF039037-5|AAC48228.3| 714|Caenorhabditis elegans Temporarily
assigned gene nameprotein 40 protein.
Length = 714
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +2
Query: 149 GITEKGMALDSPSKKGNVEYIAYPIRWLVLFIFVFYSASNA-FQWVQYSIIQDTVVKYYG 325
G+ M+L + + + AY + W+VL F + S F + Y + DTV+
Sbjct: 599 GLIRDFMSLSFWTPLARLSFCAYLVHWMVLGYFFGRNHSELYFSTLSYFFL-DTVIPVTA 657
Query: 326 VPSIM-VYWTSM 358
+ ++ ++W+SM
Sbjct: 658 LSFVIAIFWSSM 669
>AF125972-1|AAD14770.2| 349|Caenorhabditis elegans Hypothetical
protein H25P19.1 protein.
Length = 349
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -1
Query: 626 DTASGRHLIGPQTTRPPAAEVRLG*TPARWPPPFDPRSPARTCLGARRTPSAMLRRRYRT 447
++ +G + P+ +RPP ++ TP++ +P + + + P + + RT
Sbjct: 256 ESTNGTPMPEPEPSRPPRINLKFRFTPSK----LGTATPGISIISSPTPPKSPPKSTPRT 311
Query: 446 HQVSLSPADPLYPRAS*PERSGVYKS-PCRPLRS 348
+ S P P R+ R G KS P R RS
Sbjct: 312 SK-STPPKRPYLKRSLEQARGGAQKSYPARTRRS 344
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,174,786
Number of Sequences: 27780
Number of extensions: 385852
Number of successful extensions: 1330
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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