Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6a06
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    28   1.4  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    27   1.8  
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    26   4.1  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   5.5  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   7.2  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    25   7.2  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    25   7.2  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    25   9.5  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.5  

>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 420 LLTGILFQNFGLVTMTDEYRKLNQDLRKLALVIILTR-AGLGLDAKVLKKHYAAV 581
           LL GIL   FG++ + +  R L    R    + ILTR AGL  D  +++K Y A+
Sbjct: 188 LLWGILMF-FGMLFLPESPRYLAVKGRNEECMKILTRNAGLPADHPIMQKEYNAI 241


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 96  PTTESDEDYGNLNKEKMEDSREP 164
           P+   DE  GNLN +  E++REP
Sbjct: 174 PSDSEDEWEGNLNAKNYEENREP 196


>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -1

Query: 598 NKPSCNTAA*C-FFNTLASNPRPALVRIITSASFLRS*FNFLYSSVIVTSPKFWKSIPVS 422
           NK   N+A     +    S P P L+       F    ++ L++ ++ T  K W  +  +
Sbjct: 173 NKSKANSAGLINLYEITKSYPTPELL-FTDGLHFSSLGYSLLFNEIVATISKAWPELLPN 231

Query: 421 NMPIR 407
           N+P++
Sbjct: 232 NLPLQ 236


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 111 DEDYGNLNKEKMEDSR 158
           DEDY NL +EK+++ R
Sbjct: 799 DEDYSNLRREKLKELR 814


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 463 IVTSPKFWKSIPVSNMPIRAGNVVTLSQIQQNKI 362
           + TSPK     PV   P+ AGN + ++ +  NK+
Sbjct: 594 VPTSPKPLAIEPVKRKPVHAGN-LEVTSVSDNKL 626


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 90  RLPTTESDEDYGNLNKEKMEDSREPGARVYTFIDD--NDER 206
           ++P  E D  + N+N +++E+  E   ++ +F DD  +DER
Sbjct: 340 KIPLIEDDTSFMNVNPDELEELLE--KKLNSFCDDFGDDER 378


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 403 GNVVTLSQIQQNKIKQIFRADCLYVENKGNGKN 305
           GNV+     +Q   +  FR +  + E + NGKN
Sbjct: 33  GNVINAQSSRQPSSENEFRENLFFKEMRTNGKN 65


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 105 ESDEDYGNLNKEKMEDSREPGARVYTFIDDNDERRDEIYYD 227
           E  E+   L K++ E S+E    V    +  + RR+  YYD
Sbjct: 137 EKKEEISKL-KDRTEASKEESKTVTDHSNRRESRRESTYYD 176


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 189 DDNDERRDEIYYDKWWQK 242
           D+N  R  + YYD  WQK
Sbjct: 256 DENISRHSKSYYDASWQK 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,182
Number of Sequences: 5004
Number of extensions: 50966
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)