Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6a06
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 31 1.1
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 31 1.1
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 29 3.2
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 29 3.2
04_04_1066 - 30533114-30533185,30533507-30533614,30533716-305340... 28 5.6
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 28 5.6
03_01_0579 - 4274927-4274998,4275320-4275427,4275529-4275904,427... 28 5.6
01_01_0527 + 3867621-3867764,3867855-3868128,3868216-3868315,386... 28 5.6
08_02_1448 - 27168389-27172021 27 9.9
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 27 9.9
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 27 9.9
01_05_0217 - 19390788-19391048,19392205-19392438,19393474-193937... 27 9.9
>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +3
Query: 414 GMLLTGILFQNFGLVTMTDEYRKLNQ--DLRKLALVIILTRAGLG 542
G+LL L ++ ++TMTD YR L+Q D+ +L L++ L + G
Sbjct: 919 GLLLAFGLHEHLRVLTMTDAYRYLSQEHDITRLGLLLGLAASNRG 963
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 108 SDEDYG-NLNKEKMEDS--REPGARVYTFIDDNDERRDEIYYDKWWQKFCLRFHQPDSTP 278
S++++G NL E +++S E G+ Y + D+R D Y +W + + D T
Sbjct: 128 SEKEWGINLLDEAVKESGTNEDGSTWYR--ESGDDRGDNGYRCRWAR---MGGQSHDGTT 182
Query: 279 SWKPKWWTR 305
WK WW +
Sbjct: 183 EWKETWWEK 191
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 270 STPSWKPKWWTRFFP-FPLFSTYRQSALKICFILFCWIWLKVTTLPALIGML 422
STP+ +PKW F P +PL + +A+ ++L + ++T L +IG +
Sbjct: 458 STPNGQPKWLLSFVPDYPLLNFMLTTAI---YLLLSYRVFEITELSWIIGRM 506
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +3
Query: 114 EDYGNLNK-EKME--DSREPGARVYTFIDDNDERRDEIYY---DKWWQKFCL 251
+D NLN+ EKM+ D E AR I++ +RDE+Y+ D QK CL
Sbjct: 1451 KDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQKLCL 1502
>04_04_1066 -
30533114-30533185,30533507-30533614,30533716-30534091,
30534173-30534330,30534416-30534536,30534613-30534831,
30534923-30535022,30535254-30535383,30535474-30535617
Length = 475
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 436 SIPVSNMPIRAGNVVTLSQIQQNKIKQIFRA 344
+IP+ N ++ GN+V +S+I N K +RA
Sbjct: 60 AIPLLNQYLQEGNIVYISKITVNNAKPSYRA 90
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 351 KICFILFCWIWLKVTTLPALI 413
+ C + FCWIWL T A I
Sbjct: 87 RCCLLCFCWIWLTGNTSTAKI 107
>03_01_0579 -
4274927-4274998,4275320-4275427,4275529-4275904,
4275986-4276143,4276229-4276349,4276426-4276644,
4276736-4276835,4276923-4277196,4277287-4277430
Length = 523
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 436 SIPVSNMPIRAGNVVTLSQIQQNKIKQIFRA 344
+IP+ N ++ GN+V +S+I N K +RA
Sbjct: 60 AIPLLNQYLQEGNIVYISKITVNNAKPSYRA 90
>01_01_0527 +
3867621-3867764,3867855-3868128,3868216-3868315,
3868407-3868625,3868702-3868822,3868908-3869065,
3869147-3869522,3869624-3869731,3870053-3870124
Length = 523
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 436 SIPVSNMPIRAGNVVTLSQIQQNKIKQIFRA 344
+IP+ N ++ GN+V +S+I N K +RA
Sbjct: 60 AIPLLNQYLQEGNIVYISKITVNNAKPSYRA 90
>08_02_1448 - 27168389-27172021
Length = 1210
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 453 LVTMTDEYRKLNQDLRKLALVIILTRAGLGLDAKVLKKHYAAVLQL 590
LV M + LN +LR L ++ T+AG G+D +H A L+L
Sbjct: 675 LVRMPPNFGLLN-NLRTLTTFVLDTKAGCGIDELKNLRHIANRLEL 719
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 323 ILNVQAISSENLLYLILLDLAQSHYVT 403
++ +A+SSE+LLYL LD + +VT
Sbjct: 455 VVGEEALSSEDLLYLEFLDKFERKFVT 481
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 323 ILNVQAISSENLLYLILLDLAQSHYVT 403
++ +A+SSE+LLYL LD + +VT
Sbjct: 425 VVGEEALSSEDLLYLEFLDKFERKFVT 451
>01_05_0217 -
19390788-19391048,19392205-19392438,19393474-19393798,
19395781-19396121,19396422-19396502,19396640-19396759,
19397028-19397129,19397811-19397946,19398508-19398654,
19399024-19399337
Length = 686
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 248 TKFLPPFIIVYFISAFVVVIYERIN 174
T FL PFI+++F A+VV ++ IN
Sbjct: 501 TPFLLPFILIFFGLAYVVYRHQIIN 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,510,316
Number of Sequences: 37544
Number of extensions: 302695
Number of successful extensions: 768
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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