Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6a06
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical pr...    49   3e-06
Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical pr...    49   3e-06
Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z83111-4|CAB05535.2|  498|Caenorhabditis elegans Hypothetical pr...    41   7e-04
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    33   0.23 
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    33   0.23 
U61953-2|AAC48081.1|  356|Caenorhabditis elegans Seven tm recept...    28   5.0  
Z95622-1|CAB09132.2|  480|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z68131-3|CAA92219.2|  480|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF497823-1|AAM18101.1|  479|Caenorhabditis elegans putative Na-H...    28   6.7  

>Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
 Frame = +3

Query: 384 LKVTTLPALIGMLLTGILFQN---FGLVTMTDEYRKLNQDLRKLALVIILTRAGLGLDAK 554
           +K    P+LIG +L GI  +N   FG +   +EY +    LRKL+LV+I+ R G+ ++ +
Sbjct: 89  VKFIYTPSLIGCMLVGIAMRNVPQFGELFYINEYWQFI--LRKLSLVVIIIRWGISINVR 146

Query: 555 VLKKHYAAVLQLGLLPWLVECIAIAVT 635
            +KK+Y     LGL     E +AI  T
Sbjct: 147 FIKKNYIFPPILGLGSAFSEALAICFT 173


>Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
 Frame = +3

Query: 384 LKVTTLPALIGMLLTGILFQN---FGLVTMTDEYRKLNQDLRKLALVIILTRAGLGLDAK 554
           +K    P+LIG +L GI  +N   FG +   +EY +    LRKL+LV+I+ R G+ ++ +
Sbjct: 89  VKFIYTPSLIGCMLVGIAMRNVPQFGELFYINEYWQFI--LRKLSLVVIIIRWGISINVR 146

Query: 555 VLKKHYAAVLQLGLLPWLVECIAIAVT 635
            +KK+Y     LGL     E +AI  T
Sbjct: 147 FIKKNYIFPPILGLGSAFSEALAICFT 173


>Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical
           protein F41E7.1 protein.
          Length = 516

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
 Frame = +3

Query: 387 KVTTLPALIGMLLTGILFQNFGLVTMTDEYRK----LNQDLRKLALVIILTRAGLGLDAK 554
           K   LP L G L  GI+ +N   +T+ D++      +   +RK+ALV+I+ R GL  D  
Sbjct: 86  KALRLPPLFGCLALGIIIKN---ITVFDQFFVFPPFVETMIRKVALVMIIVRWGLATDIH 142

Query: 555 VLKKHYAAVLQLGLLPWLVECIAIAVTTHYLLH 653
            L ++    + +GL+  + E IA+ + ++++L+
Sbjct: 143 FLYENALMPVTIGLVTAIGEIIAVTIASYFILN 175


>Z83111-4|CAB05535.2|  498|Caenorhabditis elegans Hypothetical
           protein F57G8.5 protein.
          Length = 498

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +3

Query: 399 LPALIGMLLTGILFQNFGLVTMTDEYRKLNQDL-RKLALVIILTRAGLGLDAKVLKKHYA 575
           LP L G L  GI+ +N  ++          + + RK+AL +I+ R GL  D K L ++  
Sbjct: 81  LPPLFGCLALGIVIRNVDVLKDFFIIPPFTETMIRKVALAMIVIRWGLATDVKFLYENAV 140

Query: 576 AVLQLGLLPWLVECIAIAVTTHYLL 650
             + +GL+  + E IAI + +  +L
Sbjct: 141 TPVTIGLVTAIGEIIAITIASFLIL 165


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
            protein.
          Length = 917

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
 Frame = +3

Query: 249  LRFHQPDSTPSWKPKWWTRFFPFPLFSTYRQSAL-----KICFI-LFCWIWLKVTTLPAL 410
            L   +PD+   W P+WW     F L S+  Q  L      + F+ +F +I LK     A+
Sbjct: 717  LEMTKPDNG-WWAPEWWLMSTWFDLLSSIVQDCLSSVVGSLVFVAIFAFIQLKFQAFAAV 775

Query: 411  IGMLLTGILFQNFGLVTMTDEYRKLNQDLRKLALVIILTRAGLGLDAKVLKKHYAAVL 584
            +   +  ++F +  +VT+      L   L  L  VI++   GL  D  +   HY A L
Sbjct: 776  V--TIACVIFTSSAIVTL------LGWVLGVLEAVILVLVVGLSFDYTL---HYGAAL 822


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
            chemotaxis protein 14 protein.
          Length = 917

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
 Frame = +3

Query: 249  LRFHQPDSTPSWKPKWWTRFFPFPLFSTYRQSAL-----KICFI-LFCWIWLKVTTLPAL 410
            L   +PD+   W P+WW     F L S+  Q  L      + F+ +F +I LK     A+
Sbjct: 717  LEMTKPDNG-WWAPEWWLMSTWFDLLSSIVQDCLSSVVGSLVFVAIFAFIQLKFQAFAAV 775

Query: 411  IGMLLTGILFQNFGLVTMTDEYRKLNQDLRKLALVIILTRAGLGLDAKVLKKHYAAVL 584
            +   +  ++F +  +VT+      L   L  L  VI++   GL  D  +   HY A L
Sbjct: 776  V--TIACVIFTSSAIVTL------LGWVLGVLEAVILVLVVGLSFDYTL---HYGAAL 822


>U61953-2|AAC48081.1|  356|Caenorhabditis elegans Seven tm receptor
           protein 185 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 216 IYYDKWWQKFC-LRFHQPDSTPSWKPK 293
           I+Y  WW   C L FH  DST  +  K
Sbjct: 143 IFYGTWWSVLCYLYFHFDDSTDDYMRK 169


>Z95622-1|CAB09132.2|  480|Caenorhabditis elegans Hypothetical
           protein B0395.1 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 248 FAFSSTGLDTLLET*VVDAVFPVSFILNVQAISSENLLYL 367
           + F+ T +DTLL + V+ AV PV+ +   + I    LLY+
Sbjct: 94  YDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYI 133


>Z68131-3|CAA92219.2|  480|Caenorhabditis elegans Hypothetical
           protein B0395.1 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 248 FAFSSTGLDTLLET*VVDAVFPVSFILNVQAISSENLLYL 367
           + F+ T +DTLL + V+ AV PV+ +   + I    LLY+
Sbjct: 94  YDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYI 133


>AF497823-1|AAM18101.1|  479|Caenorhabditis elegans putative Na-H
           exchanger isoform 1 protein.
          Length = 479

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 248 FAFSSTGLDTLLET*VVDAVFPVSFILNVQAISSENLLYL 367
           + F+ T +DTLL + V+ AV PV+ +   + I    LLY+
Sbjct: 93  YDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYI 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,927,761
Number of Sequences: 27780
Number of extensions: 282489
Number of successful extensions: 795
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)