Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6a03
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    88   8e-19
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   2.7  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.6  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    26   3.6  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.4  

>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 88.2 bits (209), Expect = 8e-19
 Identities = 53/121 (43%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
 Frame = +1

Query: 196 EEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQ-NDI 372
           E +  + + +++RP SPHLTIY  QLT  LS  HR TG ++     A  +G LV+     
Sbjct: 46  EANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVVAGTLYAFAMGYLVAPLAGY 105

Query: 373 SHYITMIEGLNLSPATLFL--AKVIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTGYA 546
           S     I GL     T     AK +I+ PL +H  NGIRHL WDT K LS+K VY TGYA
Sbjct: 106 SLDTATISGLIQQVPTWIKVPAKFVISYPLTFHIFNGIRHLIWDTTKELSLKGVYRTGYA 165

Query: 547 M 549
           +
Sbjct: 166 V 166


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 181 FEPPKEEHHDVRNAKLNRP 237
           F+ PKE+H   R+ KL+RP
Sbjct: 7   FQDPKEKHRIQRDVKLSRP 25


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 199 EHHDVRNAKLNRPLSPHLTIYS 264
           E   ++NAK+  P+S HL  YS
Sbjct: 133 ESQRIKNAKMKSPISTHLAKYS 154


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = +1

Query: 217 NAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMIE 396
           N KLN+ L  HL     Q T    + HR T      + S L  G   +  D+    T I 
Sbjct: 20  NIKLNKTLQDHLDELEEQFTIPTELLHRVT----DRFVSELYKGLTTNPGDVPMVPTWII 75

Query: 397 G 399
           G
Sbjct: 76  G 76


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 219 IPHIMMFFFWGLKLNKRNFRGIRG 148
           +P   +FFFWG ++ +R+    +G
Sbjct: 524 VPIPFIFFFWGRRIRQRSPHAYKG 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,219
Number of Sequences: 5004
Number of extensions: 44782
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)