Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5p20
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179           30   1.9  
05_04_0259 + 19494629-19495394,19495408-19495949                       30   1.9  
02_01_0507 - 3682383-3682703,3682830-3682970,3683071-3683147,368...    29   2.4  
04_03_0937 + 20923705-20923833,20924001-20924012,20924413-209244...    28   7.5  
03_06_0643 + 35248597-35250585,35250663-35250773,35250867-352509...    28   7.5  
05_04_0038 + 17403620-17403769,17403975-17404038,17404807-174048...    27   9.9  
03_01_0332 + 2621058-2621348,2621505-2622263                           27   9.9  
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935...    27   9.9  

>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
          Length = 312

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -1

Query: 652 PPRRERIHVPKLSTLLRSVL***C-SPRPGACTSRWAMTSRAPR*RKDPGHYGASCLGSV 476
           PP R   HVP  STLL       C +PRP +C   +A      +    P   G    G +
Sbjct: 13  PPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSCFHSYAAGEGYEQLDPMPETAGVEVFGLI 72

Query: 475 ARQCERSQEW 446
           A   E ++ +
Sbjct: 73  AAFMEAAENF 82


>05_04_0259 + 19494629-19495394,19495408-19495949
          Length = 435

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 118 FRAVMQGSQHVGKGVHTSSVTTE-KNVCYAPFGALQPRATKEGRIKCTLIPGDGVGPE 288
           +   M GS   G  V T  +  + K V +  FGA    ATK+G + C  +   GV PE
Sbjct: 336 YDGTMVGSTRAGPAVPTVELVLQSKAVSWVVFGANSMVATKDGAL-CFGVVDGGVAPE 392


>02_01_0507 -
           3682383-3682703,3682830-3682970,3683071-3683147,
           3683835-3683901
          Length = 201

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 543 IAQREVQAPGRGLHHHQRTDRRRVLSFG 626
           +A R V A G G H HQR  RR+ L  G
Sbjct: 91  LATRTVPAAGIGSHSHQRPHRRQALHAG 118


>04_03_0937 +
           20923705-20923833,20924001-20924012,20924413-20924473,
           20924523-20924749,20924859-20925104,20925645-20925657,
           20927681-20928302,20928320-20928949,20928960-20929224
          Length = 734

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 387 TRRRRKLYRC*QDLYQGYLSHS*LLSHWRATDPKHE 494
           +RRRR LY    D  +GY  H   LSH      +HE
Sbjct: 272 SRRRRHLYLVLDDWKEGYSLHKLDLSHVSGDGGEHE 307


>03_06_0643 +
           35248597-35250585,35250663-35250773,35250867-35250971,
           35252215-35252304
          Length = 764

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 517 YANVVHVKSLPNVKCRHQDVDCIIIREQTEGEYSALEHESV 639
           Y N +H  +   V  RH +      R+QT+G +S L+ E +
Sbjct: 724 YGNQLHPSNTMQVFIRHTEGKNSFSRKQTQGRHSPLDVEQI 764


>05_04_0038 +
           17403620-17403769,17403975-17404038,17404807-17404865,
           17404981-17405056,17405196-17405267,17405411-17405498,
           17405617-17405872,17405972-17406087,17406757-17406977,
           17407074-17407102,17407192-17407291,17407405-17407492,
           17407640-17407874
          Length = 517

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 340 FESFFFSEVNPTLSAPLEDVVNSIAVNKICIKGILATPDF--SHTGELQTLNMKLRNALD 513
           + S + S  N  + APL+D+   IA      K    TP+F   +T + Q L   L    +
Sbjct: 339 YSSVYTSNNNNVVKAPLQDLTADIATLFRATKNDTPTPEFLPGNTVDPQGLENALEYIRE 398

Query: 514 LYANV 528
            Y N+
Sbjct: 399 NYGNL 403


>03_01_0332 + 2621058-2621348,2621505-2622263
          Length = 349

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 406 SIAVNKICIKGILATPDFSHTGELQTLNMKLRNALDLYANVVHVKSLPN 552
           S+   K C+   L   D  H GEL    +  +N + +   V  V  +PN
Sbjct: 261 SLGFGKFCVARFLHPNDRIHKGELGDEELSSQNCITVLTGVEVVPRVPN 309


>01_06_1514 -
           37892552-37893074,37893291-37893367,37893471-37893587,
           37893826-37893926,37895077-37895146,37895318-37895415,
           37896326-37896419,37896792-37896882,37897222-37897547,
           37898193-37898278,37899078-37899417
          Length = 640

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 310 VFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNK 423
           V +++SIP +     +  + PT+ + L   VNS  VN+
Sbjct: 403 VSRSSSIPPNTRDALYQSLPPTVKSSLRSKVNSFVVNE 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,370,502
Number of Sequences: 37544
Number of extensions: 398721
Number of successful extensions: 988
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)