Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5p19
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    31   0.71 
Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical ...    28   6.6  
U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian ...    27   8.7  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    27   8.7  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +1

Query: 136 TSRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTPWSTATSCGSAT 315
           TS T  TTA+S   +T     +  T +   + +     +  S T + T  ST  S  ++T
Sbjct: 187 TSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTST 246

Query: 316 DRILSKSTS 342
           D   ++STS
Sbjct: 247 DSTTTESTS 255


>Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical
           protein F09E8.6 protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 424 PQPIPRMRELPTAMVLTSTLNSSVGSSLPCGRTTECTSGPQ 546
           P+P+PR +E       ++T  +S  +S     TT  TS P+
Sbjct: 426 PKPVPRNKEKENKSASSTTRGTSTATSTTPKTTTTTTSAPK 466


>AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical
           protein Y76A2A.1 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -3

Query: 169 VRMLLYSLSSRSWLEGLMLSADSSTTPALAASTHIANTTRSFILL 35
           V++LL ++S R     L  SA S+ T   A S HIA  ++  ILL
Sbjct: 118 VQLLLCNISDRDIFVKLRCSAASNITALPAGSGHIAPKSQMRILL 162


>U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 1 protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 24/93 (25%), Positives = 42/93 (45%)
 Frame = +1

Query: 46  NFSLCSQCACSLPAPASWNYPRTA*ALLTKTSRTNCTTASSPVTTTVLYVRAWNTRAKAR 225
           NF L    A  +  P +W     A A  T +  TN T+++S  T+  L    + T A   
Sbjct: 8   NFMLDCGMAPHMMPPINWAAAAIAVASST-SGATNATSSNSVATSQQLQHHPYGTAAGGY 66

Query: 226 AASFKM*LTI*SLTRDGTPWSTATSCGSATDRI 324
             + +      ++ +  TP+S AT+C  +++ I
Sbjct: 67  KHAQQ------AIPKSVTPYSDATNCKKSSNHI 93


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +3

Query: 279 TMEYCYKLWVGNGQDIVKKYFPLSFRLI 362
           T  YC+K ++ +  +++K+Y  + + L+
Sbjct: 557 TYRYCHKFYLKDNSEVIKEYLGIFYHLV 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,224,190
Number of Sequences: 27780
Number of extensions: 295441
Number of successful extensions: 1089
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)