Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5p18
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical ...    30   1.7  
U64848-4|AAB04883.1|   96|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical...    27   9.2  
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    27   9.2  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    27   9.2  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical
           protein Y67A10A.6 protein.
          Length = 447

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 113 LKVSKAVCISLRYTNSKYITFQFKIFKP 196
           L++ K+ C S+   ++KY+T QF   KP
Sbjct: 408 LQLKKSFCFSINLYSNKYLTAQFSTIKP 435


>U64848-4|AAB04883.1|   96|Caenorhabditis elegans Hypothetical
           protein C50E3.8 protein.
          Length = 96

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 261 FNFIVSVISSKFIVK*YKKFQLNIICFSSSIRAK 362
           FNF   + S+K+IVK +K FQ  +I F  S  AK
Sbjct: 64  FNFATQLFSAKYIVK-FKYFQ-KVIVFLKSTLAK 95


>AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical
           protein T08B2.5g protein.
          Length = 695

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 223 NLISLSESNRFEYLELKS 170
           ++I LSES RF YL++KS
Sbjct: 163 SMIKLSESKRFAYLQMKS 180


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 223 NLISLSESNRFEYLELKS 170
           ++I LSES RF YL++KS
Sbjct: 306 SMIKLSESKRFAYLQMKS 323


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 223 NLISLSESNRFEYLELKS 170
           ++I LSES RF YL++KS
Sbjct: 334 SMIKLSESKRFAYLQMKS 351


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 223 NLISLSESNRFEYLELKS 170
           ++I LSES RF YL++KS
Sbjct: 392 SMIKLSESKRFAYLQMKS 409


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 223 NLISLSESNRFEYLELKS 170
           ++I LSES RF YL++KS
Sbjct: 393 SMIKLSESKRFAYLQMKS 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,443,340
Number of Sequences: 27780
Number of extensions: 215651
Number of successful extensions: 376
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)