Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5p17
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591 112 3e-25
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977... 98 7e-21
01_06_1496 + 37772838-37772935,37773039-37773243,37773649-377737... 54 1e-07
01_01_0549 - 4051257-4051709,4051967-4052075,4053194-4053252,405... 46 4e-05
03_05_0988 - 29458789-29459776,29459875-29460035,29460134-294602... 36 0.040
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 35 0.053
02_02_0578 + 11745811-11746013,11749902-11750241,11750325-117505... 32 0.49
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163... 31 0.65
01_01_0655 - 5001495-5002392,5002493-5002653,5002779-5003184,500... 31 1.1
05_03_0492 - 14688449-14689445,14689910-14690070,14690690-14691022 30 2.0
05_02_0035 - 5872635-5873538,5873679-5873839,5873958-5874077,587... 30 2.0
03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268 28 6.1
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 28 8.0
>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
Length = 455
Score = 112 bits (269), Expect = 3e-25
Identities = 65/197 (32%), Positives = 107/197 (54%)
Frame = +1
Query: 100 RQLSVCRTMAEKFRLPERYGAGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPKHVTEAL 279
+Q V T+ + +R + +++ + LA ++ A+NLGQGFP++ P V EA
Sbjct: 59 QQQPVQSTLGPGVTVAKRLEKFKTTIFTQMSMLAIKHG-AINLGQGFPNFDGPDFVKEAA 117
Query: 280 SQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTIL 459
Q + +QY RG+G+P L +++ + G Q+D E+ VTSG EA+ +TIL
Sbjct: 118 IQAINAGK---NQYARGYGVPELNSAIAERFLKDSGLQVDPEKEVTVTSGCTEAIAATIL 174
Query: 460 GHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGDDISSADWVLDEAELASLF 639
G ++ GDEVI+ P++D Y+ + AG + I L+P D+ + EL +
Sbjct: 175 GLINPGDEVILFAPFYDSYEATLSMAGANVKAITLRP---------PDFSVPLEELKAAV 225
Query: 640 NNRTKMIIVNTPHNPLG 690
+ T+ I++NTPHNP G
Sbjct: 226 SKNTRAIMINTPHNPTG 242
>10_08_0422 -
17796916-17797167,17797328-17797453,17797546-17797700,
17797793-17797907,17798022-17798118,17798274-17798368,
17798500-17798585,17798689-17798819,17798909-17799090
Length = 412
Score = 97.9 bits (233), Expect = 7e-21
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 1/171 (0%)
Frame = +1
Query: 181 VEYIQLAAEYKPAVNLGQGFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGL-PRLVEN 357
++ + A+ AVNL +GFPD+ AP HV A + ++ L+QY G+ L E
Sbjct: 17 IQQLSHLAQRAGAVNLAEGFPDFPAPAHVKAAAAAAIAAD---LNQYRHVQGICDALAET 73
Query: 358 LSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCA 537
+ + + G ++D + V G EA + I +D GDEV++ +P F+ Y ++ A
Sbjct: 74 MKRDH----GLRVDPLTDFAVCCGQSEAFAAAIFAIIDQGDEVLLFDPAFETYQTCIELA 129
Query: 538 GGVPRFIALKPKPQGDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLG 690
GVP ++ L P W L+E + F NRTK +++N+PHNP G
Sbjct: 130 RGVPVYVPLDP---------PSWTLNEDKFLKSFTNRTKAVVLNSPHNPTG 171
>01_06_1496 +
37772838-37772935,37773039-37773243,37773649-37773742,
37773830-37773933,37774370-37774618,37774706-37774819,
37775010-37775093,37775292-37775462,37775544-37775657,
37775751-37775894
Length = 458
Score = 53.6 bits (123), Expect = 1e-07
Identities = 42/159 (26%), Positives = 70/159 (44%)
Frame = +1
Query: 214 PAVNLGQGFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQ 393
P + L G PD+ P + EA A + +YT G L + + G
Sbjct: 82 PVIGLAAGEPDFDTPHVIAEA-GMNAIKDG--YTRYTPNAGTLELRKAICNKLQEENGIS 138
Query: 394 IDAFNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPK 573
+++LV++GA + + +L GDEV+I PY+ Y M AG P +
Sbjct: 139 YSP-DQVLVSNGAKQCITQAVLAVCSPGDEVLIPAPYWVSYPEMATLAGATPVILPTS-- 195
Query: 574 PQGDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLG 690
S +++L LAS N +++++I+ +P NP G
Sbjct: 196 ------ISENFLLRPELLASKINEKSRLLILCSPSNPTG 228
>01_01_0549 -
4051257-4051709,4051967-4052075,4053194-4053252,
4053339-4053445,4053711-4053867,4054110-4054169,
4055396-4055524,4056027-4056074,4057148-4057214,
4057948-4058006
Length = 415
Score = 45.6 bits (103), Expect = 4e-05
Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 5/191 (2%)
Frame = +1
Query: 133 KFRLPERYGAGEKSVWVEYI---QLAAEYKPAVNLGQGFPDYHAPKHVTEALSQIATSEN 303
+F L A + S W E +L K ++L QG + P+ + +I
Sbjct: 22 RFGLAFEQKAQKVSAWEEQNAMQELLRGNKDVMSLAQGVVYWQPPEAAMNKIKEIVWE-- 79
Query: 304 PLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDE 483
P + +Y GLP L E L + L + I+VTSGA +A + +L D GD
Sbjct: 80 PSISKYGSDDGLPELREALLE---KLRRENKLTKSSIMVTSGANQAFVNVVLTLCDAGDA 136
Query: 484 VIIIEPYFDCYDFMVKCAGGVPRFI--ALKPKPQGDDISSADWVLDEAELASLFNNRTKM 657
V++ PY+ +M GV + A P+ D+ + VL E N K+
Sbjct: 137 VVMFAPYY-FNSYMSFQMTGVTDILVGASNPETLHPDVDWLEKVLQEN------NPIPKL 189
Query: 658 IIVNTPHNPLG 690
+ V P NP G
Sbjct: 190 VSVVNPGNPSG 200
>03_05_0988 -
29458789-29459776,29459875-29460035,29460134-29460271,
29460367-29460543
Length = 487
Score = 35.5 bits (78), Expect = 0.040
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Frame = +1
Query: 334 GLPRLVENLSKVYSPLIGRQI--DAFNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYF 507
GLP L++ S G ++ D N I++T+GA A + + D GD +I PY+
Sbjct: 99 GLPAFKNALARFMSEQRGYKVVFDPSN-IVLTAGATSANEALMFCLADHGDAFLIPTPYY 157
Query: 508 DCYDFMVKCAGGVPRFIALKPKPQGDDISSADWVLDEA-ELASLFNNRTKMIIVNTPHNP 684
+D +K G G ++ LD+A A R K +++ P NP
Sbjct: 158 PGFDRDLKWRTGAEIVPVHCASANGFRVTRP--ALDDAYRRAQKRRLRVKGVLITNPSNP 215
Query: 685 LG 690
LG
Sbjct: 216 LG 217
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 35.1 bits (77), Expect = 0.053
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 4/164 (2%)
Frame = +1
Query: 211 KPAVNLGQG----FPDYHAPKHVTEALSQIATSENPLLHQYTRGFGLPRLVENLSKVYSP 378
+P + L G FP++ +A++ S + + Y G GLP ++ S
Sbjct: 62 RPVLPLAHGDPSVFPEFRTAAEAEDAVADALRSGD--FNCYPAGVGLPAARRAVADHLSR 119
Query: 379 LIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFI 558
+ ++ + ++I +T+G +A+ I G +++ P + Y+ + A F
Sbjct: 120 DLPYKLSS-DDIFLTAGGTQAIEVVISILAQPGTNILLPRPGYPNYE--ARAA-----FN 171
Query: 559 ALKPKPQGDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLG 690
L+ + D I W +D L S+ + T I++ P+NP G
Sbjct: 172 NLEVR-HFDLIPEKGWEIDLNSLESIADKNTTAIVIINPNNPCG 214
>02_02_0578 +
11745811-11746013,11749902-11750241,11750325-11750543,
11751043-11751102,11751262-11751417,11751518-11751611,
11751914-11751927
Length = 361
Score = 31.9 bits (69), Expect = 0.49
Identities = 23/95 (24%), Positives = 40/95 (42%)
Frame = +1
Query: 406 NEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGD 585
N+I +TSG +A+ I G +++ +P F Y+ + R L P+
Sbjct: 85 NDIYLTSGCVQAIEVMISVLAQPGSNILLPKPGFPLYESRTTFSNLEVRHFDLIPE---- 140
Query: 586 DISSADWVLDEAELASLFNNRTKMIIVNTPHNPLG 690
W +D + ++ + T I+V P NP G
Sbjct: 141 ----RGWEVDLEGVQAIADENTVAIVVINPSNPCG 171
>06_01_0213 +
1628974-1629339,1629441-1629590,1630935-1631095,
1631178-1631892,1632045-1632091,1632295-1632316
Length = 486
Score = 31.5 bits (68), Expect = 0.65
Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +1
Query: 406 NEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGD 585
+++++TSGA A+ D G+ ++ PY+ +D +K G+ + P D
Sbjct: 191 SQVVITSGATPAMEILSFCLADPGNAFLVPSPYYPGWDRDIKWRTGIE--LIPVPCRSTD 248
Query: 586 DISSADWVLDEA-ELASLFNNRTKMIIVNTPHNPLG 690
+ + + L+ A A + + ++++ P+NP G
Sbjct: 249 NFNISITALEIAYNQAKKRGIKVRGVLISNPNNPTG 284
>01_01_0655 -
5001495-5002392,5002493-5002653,5002779-5003184,
5003523-5003572,5004710-5004727
Length = 510
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/95 (24%), Positives = 42/95 (44%)
Frame = +1
Query: 406 NEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGD 585
+ I++T+GA A + GD ++I PY+ +D ++ GV G
Sbjct: 177 DHIVLTAGATAANELLTFILANPGDALLIPTPYYPGFDRDLRWRTGVNIVPVRCDSANGF 236
Query: 586 DISSADWVLDEAELASLFNNRTKMIIVNTPHNPLG 690
++ A E A++ R + +++ P NPLG
Sbjct: 237 QVTVAALQAAYDEAAAV-GMRARAVLITNPSNPLG 270
>05_03_0492 - 14688449-14689445,14689910-14690070,14690690-14691022
Length = 496
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +1
Query: 406 NEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGD 585
+ I++T+GA A D D ++I PY+ +D ++ GV G
Sbjct: 130 DRIVLTAGATAANELLTFILADPRDALLIPTPYYPGFDRDLRWRTGVNVVPVHCDSANGF 189
Query: 586 DISSA--DWVLDEAELASLFNNRTKMIIVNTPHNPLG 690
+++A DEA A + R + +++ P NPLG
Sbjct: 190 QVTAAALQAAHDEAAAAGM---RVRGVLITNPSNPLG 223
>05_02_0035 -
5872635-5873538,5873679-5873839,5873958-5874077,
5874202-5874330
Length = 437
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +1
Query: 406 NEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGD 585
+ +++T+GA A D GD +++ PY+ +D ++ GV G
Sbjct: 102 DRVVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVNIVPVSCDSAAGF 161
Query: 586 DISSADW--VLDEAELASLFNNRTKMIIVNTPHNPLG 690
+++ DEA A R + +++ P NPLG
Sbjct: 162 QVTAGALRAAYDEAVAAG---TRVRGVLITNPSNPLG 195
>03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268
Length = 574
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 193 VCTQPIRFSHQLHNVPAIETFLPL 122
+C P+ F++ L N PA ETFLPL
Sbjct: 294 MCAAPVVFNN-LINAPASETFLPL 316
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 542 PPAHFTMKS*Q-SKYGSIMITSSPVST*PKMVE*SAS*APLVTRISLKASICRPISGE 372
PP H T S Q + YG+ ++ P T P + S + P+++R +K ++ R + +
Sbjct: 262 PPLHPTSASAQRATYGTPLLQPFPPPTPPPSLTPSYNEGPIISRDKVKEALLRLVQND 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,845,796
Number of Sequences: 37544
Number of extensions: 404867
Number of successful extensions: 835
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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