Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5p16
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 57 1e-08
05_01_0021 - 148084-148191,148387-148488,148641-148727,148845-14... 47 1e-05
12_02_1219 + 27096477-27096590,27096704-27097078 31 0.90
03_05_0630 + 26260159-26260272,26260520-26260894 31 1.2
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 30 1.6
05_05_0266 - 23694466-23696787,23696885-23697187 29 2.8
01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836... 29 3.6
04_03_0521 + 16765347-16767324,16769202-16769392 29 4.8
01_01_0033 + 260562-260661,260895-260941,261582-261681,261925-26... 29 4.8
06_01_0540 - 3871347-3872072,3872784-3872997,3873088-3873320,387... 28 6.4
06_01_0530 - 3833291-3834016,3834728-3834941,3835032-3835264,383... 28 6.4
05_04_0181 + 18799445-18799593,18801112-18801163,18801964-188019... 28 6.4
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 57.2 bits (132), Expect = 1e-08
Identities = 41/148 (27%), Positives = 71/148 (47%)
Frame = +1
Query: 37 MAAKLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVE 216
MA +L +L AAA ++ D P L K VE + V L+N GSA A +
Sbjct: 3 MARSILLLLLLAAAASASADAPFLVAHKKVSLSRPKPGVERL--AVSLDLYNQGSATAYD 60
Query: 217 VKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASE 396
V + D+ + + F +V G+++ ++R+ P SH + + G F S A +TY+
Sbjct: 61 VSINDDTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVPT 120
Query: 397 DATDVQYSISSAPGEGAIVAFKDYDRKF 480
A +Q + S+ ++A + ++KF
Sbjct: 121 KAA-LQEAYSTPILALDVLAERPPEKKF 147
>05_01_0021 -
148084-148191,148387-148488,148641-148727,148845-148979,
149109-149324,149772-150043,151346-151394,151521-151526,
151657-151728,152077-152185,152272-152370,153186-153364
Length = 477
Score = 47.2 bits (107), Expect = 1e-05
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
Frame = +1
Query: 49 LLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 228
LL +L AA + D P + + K L++ + V L+N GSA A +V L
Sbjct: 11 LLLLLLVPFAAAAGQDAPFV--VAQKKVALSRPGPGVERLAVTLNLYNQGSATAYDVSLN 68
Query: 229 DNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKA-SEDAT 405
D+ + + F ++ G + ++++ P SH + + G F S A +TY+ ++ A
Sbjct: 69 DDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITYRVPTKAAL 128
Query: 406 DVQYSISSAPGEGAIVAFKDYDRKF 480
YS P + I+A + +KF
Sbjct: 129 QEAYSTPMFPLD--ILAERPPQQKF 151
>12_02_1219 + 27096477-27096590,27096704-27097078
Length = 162
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 596 FGFESFS--YLLFDEYQRPNGMARDGRVITANAAQSR 492
FGF +FS + D + NG DGR IT N AQSR
Sbjct: 51 FGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSR 87
>03_05_0630 + 26260159-26260272,26260520-26260894
Length = 162
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 596 FGFESFS--YLLFDEYQRPNGMARDGRVITANAAQSR 492
FGF +FS + D + NG DGR IT N AQSR
Sbjct: 51 FGFVTFSSEQSMRDAIEGMNGKELDGRNITVNEAQSR 87
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 364 SSAEVTYKASEDATDVQYSISSAPGEGAIVAF--KDYD---RKFSSHILDWAAFAVMTLP 528
SS + +D+++ S E A+V F KD D R + +L+W + +V
Sbjct: 3151 SSDSKKKRKGDDSSEGSSEKSCMDMEQAVVVFTGKDGDVLKRFVDTFLLEWNSTSVRH-E 3209
Query: 529 SLAIPFGLWYSSKSKYEK 582
+ ++ FGLWY +KS +++
Sbjct: 3210 AKSVLFGLWYHAKSSFKE 3227
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 58 FVLFIAAAVSADDEPVLARLLVSKQVLNKYL 150
F+LF+ A+S PVLAR+L ++LN L
Sbjct: 196 FLLFLGVALSVTAFPVLARILAEVKLLNSDL 226
>01_06_1133 +
34781799-34782071,34782168-34783166,34783252-34783663,
34783727-34784670
Length = 875
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 58 FVLFIAAAVSADDEPVLARLLVSKQVLNKYL 150
F+LF+ A+S PVLAR+L ++LN L
Sbjct: 186 FLLFLGVALSVTAFPVLARILAEIKLLNTEL 216
>04_03_0521 + 16765347-16767324,16769202-16769392
Length = 722
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 118 LVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVDNGFHPDVFT 258
++ + VL K L+ N I + + A ++ K+VD+G PD+FT
Sbjct: 74 MMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFT 120
>01_01_0033 +
260562-260661,260895-260941,261582-261681,261925-262181,
262525-262640,263014-263098,264236-264415,264740-264817,
264909-264970,265138-265246,266237-266514,266591-266657,
266734-266802,266880-266981,267309-267443
Length = 594
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 49 LLYFVLFIAAAVSADDEPVLARLLVSKQVLNK 144
+ +++L A +S D PV+ARL+ K V+ K
Sbjct: 264 ITFYLLMKAEGLSVQDHPVIARLVEIKSVVEK 295
>06_01_0540 -
3871347-3872072,3872784-3872997,3873088-3873320,
3873409-3873561
Length = 441
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +3
Query: 483 LAHPRLGGIRSYDPPVPSHSIWPLVLIKEQI*EAFKPKKGH*LSFYCNVIS*VCVANVS 659
L P LGG+R++D P +H+++ + + + A +GH Y N I +C AN S
Sbjct: 172 LMAPPLGGVRTWD-PARAHALFLPLSVSQMGPHA---SRGH-PELYANAIRALCNANTS 225
>06_01_0530 -
3833291-3834016,3834728-3834941,3835032-3835264,
3835353-3835505
Length = 441
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +3
Query: 483 LAHPRLGGIRSYDPPVPSHSIWPLVLIKEQI*EAFKPKKGH*LSFYCNVIS*VCVANVS 659
L P LGG+R++D P +H+++ + + + A +GH Y N I +C AN S
Sbjct: 172 LMAPPLGGVRTWD-PARAHALFLPLSVSQMGPHA---SRGH-PELYANAIRALCNANTS 225
>05_04_0181 +
18799445-18799593,18801112-18801163,18801964-18801999,
18802098-18802233,18802313-18802512
Length = 190
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 265 GGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTY 384
GG TA+ + Q + +T + YGY NFS EV +
Sbjct: 150 GGSSTAQHEIGPSQLDEPPPITQPTQDYGYINFSGVEVAH 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,598,230
Number of Sequences: 37544
Number of extensions: 374470
Number of successful extensions: 997
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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