Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5p15
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 94 2e-20
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 6e-06
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 30 0.26
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 28 1.4
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 28 1.4
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 2.4
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 2.4
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 3.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 3.2
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 4.2
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 4.2
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 4.2
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 4.2
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 5.6
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 7.4
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 25 7.4
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 9.8
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 9.8
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 9.8
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 93.9 bits (223), Expect = 2e-20
Identities = 63/171 (36%), Positives = 94/171 (54%), Gaps = 1/171 (0%)
Frame = +2
Query: 137 NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQ-EENAKIENSEDETELDIAIIRQVEYYF 313
+ +V +E+ +V+ K T +E ET + E++ K + S DE E +++QVE+YF
Sbjct: 20 SSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKEDDGKKDLSFDEAE----VLKQVEFYF 75
Query: 314 GDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGLLEVSED 493
D NL DKFL + +DGWVP++T+ F R+ + + + I NAL KS LLEV E
Sbjct: 76 SDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSPE-LLEVDEA 133
Query: 494 NKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLTYFKQFQE 646
+KVRR PL ++ K + RS+Y KGF D D + K F+E
Sbjct: 134 GEKVRR--MIPLVRVD---NKSVMERSVYCKGFG-DEKDDTQIALEKFFEE 178
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 45.6 bits (103), Expect = 6e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +2
Query: 296 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGL 475
Q+EYYF NL +D FL++ + D+G+VPL L FNR+ + D +++ A S +
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAAC--KASDI 388
Query: 476 LEVSED 493
++V+ D
Sbjct: 389 IDVAID 394
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 30.3 bits (65), Expect = 0.26
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 224 NGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD 370
NG + + E E+E + + + ++ N HR++FL E + +D+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRERFLTEHVNMDE 242
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.9 bits (59), Expect = 1.4
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = +2
Query: 251 ENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTED 430
+N++++ ++ + Q+ GDV + KFL +++ + + L LT + + K +
Sbjct: 20 KNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVKNCKT 79
Query: 431 TDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE--ELRKEICNRSIYAKGFAKDA 604
+ V + T LL+++ D+ R + +NE E+ K+ N S+ K
Sbjct: 80 SIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAEIMKKDPNMSLMQDICEKIR 139
Query: 605 SLD 613
LD
Sbjct: 140 KLD 142
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 587 LWRKLICCIFLYEAPRSFLAVAVLDYVSLFCYLQ 486
LW + C L E R+ + L Y SLFC+ Q
Sbjct: 199 LWAENTCSFRLAELLRNSIGDTQLQYYSLFCFWQ 232
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.4
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Frame = +2
Query: 152 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETEL-DIAIIRQVEYYFGDVNL 328
S +E+ + +PE + T + T E +EE + E E+E E+ + ++E GD++L
Sbjct: 331 SEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEEVPNYESENELEDKVGDLSL 390
Query: 329 H---RDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVI 442
F+ E ++ + + E + L K +E T+++
Sbjct: 391 SLGVASSFVDEMLR-ERNNLSAEGTSASPSLDKKSESTNIV 430
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +2
Query: 200 DKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQ-IKLDDGW 376
+K ++ E ++++AK+E+ + + E+ ++ ++ +F +L + Q+ I +
Sbjct: 886 EKGLSTEQRDEKKHAKVESFQRQ-EMPRSLFEEI--FFAIDSLTPNPQQQDTVINAVPTF 942
Query: 377 VPLETLTKFNRLAKLTEDTDVIANALNKS 463
P +TKFN+ K+ T + A +S
Sbjct: 943 APYNAMTKFNQKVKVMPGTGKVGKAARES 971
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 26.6 bits (56), Expect = 3.2
Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +2
Query: 155 IKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHR 334
++E ++++ D E +T ++ + K+E E+E E + ++R+ ++
Sbjct: 57 LEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKA 116
Query: 335 DKFLQEQIKL----DDGWVPLETLTKFNRLAKLTEDTDVIANAL 454
+ F + L DD LE +T ++ K+ + D + AL
Sbjct: 117 EHFERRVQSLERERDDMEQKLEEMT--DKYTKVKAELDEVHQAL 158
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 158 KESHRVIPEIKMTEDKEVTVETN-GQEENAK-IENSEDETELDIAIIRQV 301
+E+ + E ++ ED++V +ET+ QEE K IEN + E A ++V
Sbjct: 241 EEAVEAMEEDEVAEDEDVVLETSISQEEEKKNIENPDTEVTFISADTKKV 290
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 494 NKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASL 610
N V R N++ KE+ NR + KGFA D S+
Sbjct: 543 NSAVLRRQSSQSSGANDD--KEVRNRKVVEKGFANDCSV 579
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.2 bits (55), Expect = 4.2
Identities = 24/131 (18%), Positives = 58/131 (44%)
Frame = +2
Query: 152 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLH 331
++++ P++ + V ++ N ++E ++ N +DE E+D + + N
Sbjct: 38 AVEDGTGTSPDLNFFSTQNV-MQMNFEDEYSEFSNEDDEAEIDNSFADSIP------NEP 90
Query: 332 RDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRR 511
+Q++ D +++ + N ED V ++ S + + +DN +
Sbjct: 91 EIPDMQDEYSRDSH--SQQSVEEQNNTTNTDEDASVNEFSVAADISDVNTLGKDNSE--- 145
Query: 512 NPEQPLPEMNE 544
+ E+P+ E+NE
Sbjct: 146 STEEPVNEVNE 156
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 107 LRSLNKLAF*NQKVF----SIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDE 268
L S+N+ AF + K SI S + ED V + +E N + EN+EDE
Sbjct: 432 LGSINEQAFEDSKDLNDTNSITGSSPTEESNALVEDTSVDISATLEEANTQQENAEDE 489
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 158 KESHRVIPEIKMTEDKEVTVETNGQEENAKIENSED 265
K SH+ ++K +DK + G+ E AK+ ED
Sbjct: 55 KASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEED 90
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 369 SSNFICSCRNLSRC 328
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 220 FNSYLFVLSHFDFWNNTMRFFNGKYLLISES 128
F+SY V+ F +NNT FF G ++ + S
Sbjct: 132 FSSYQSVIDTFQKYNNTGAFFAGNEVVNNAS 162
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 7.4
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Frame = +2
Query: 311 FGDVNLHRDKFLQEQIKLDDGWVPL--ETLTKFNRLAKLTE----DTDVIANALNKSTSG 472
+ +N + KFL + K + L E TK +++L E D + L+ ++
Sbjct: 235 YSSLNANTQKFLDDLDKEIFSQIQLAEELQTKLGTVSELVESVPNDVAEVQRRLSSVSTA 294
Query: 473 LLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLTYFKQFQE 646
LL S++ + +R ++ N + I + AS D L+ YF+QF E
Sbjct: 295 LLIDSDEIETTKRVVDEDTS--NARISSRILDVFKTPGATYPFASNDPLMNYFEQFTE 350
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 350 EQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNK 460
E+++LD W T+ +F L E D ++ +NK
Sbjct: 611 EKVRLDRSWKDALTINEFFTLKNAVEKQDNVSFHVNK 647
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -2
Query: 374 IHHLILFVLAEIYLDVDLHHQNNIRLA 294
I +++ F +Y+D+D+HH + ++ A
Sbjct: 177 ILNMLRFFPRVLYIDIDIHHGDGVQQA 203
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +2
Query: 143 KVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETE 274
K F +K + R + E+K + D+E +V+ +E+ +K E+ + + +
Sbjct: 44 KAFLLKMAKRSVEELKRSADEEASVKR--KEKKSKHEHKKHKKD 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,018
Number of Sequences: 5004
Number of extensions: 54479
Number of successful extensions: 188
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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