Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5p13
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    29   0.83 
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    28   1.1  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   3.4  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    26   4.4  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    26   4.4  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   7.8  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   7.8  

>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = +1

Query: 211 LFGGKNMSVISVTLALIASHITSITLLGVPVEIYLRGTQYWASALSLIIVTFLTAVIYL- 387
           +FG   +++ +  L L+   I+S  LLG  +  YL  T+Y+    SL +V  ++ ++ + 
Sbjct: 352 IFGKARLNLSNFQLTLLGMGISSFALLGTVIIPYL--TEYF-QLNSLQVVMIISILLPMA 408

Query: 388 PVFHKLQLSSSFEYLEIRFS 447
           P++  L     FE   IR S
Sbjct: 409 PLYGLLGYIPGFENAGIRTS 428


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +1

Query: 487 SKLMLLPIVPYVPLTAFRLVTDQLAERITAVVCV 588
           S + LL I  +VPLT  R+ TD++A+ + A VCV
Sbjct: 524 SAINLLEI--FVPLTG-RIGTDKVADNVVATVCV 554


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 288 ARCASRDISKRNAILGVCSVSDHCNISHSRYLFTSVPQTATVVELRVFRDKI 443
           AR  + D+   +A   +CSVS H N + S      +      V LR+ R  I
Sbjct: 527 ARSGNVDLLHLHAYPVICSVSSHTNFTFSNVYKAFIENGKIDVALRLLRKHI 578


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 677 PVPAIARNTVTMPSVTIACSPPTAIKVAQDTHTTA 573
           P+P + +NT   PS +I+  PP+A   A   H TA
Sbjct: 522 PLPRV-KNTQN-PSRSISAEPPSATSTANRRHPTA 554


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -1

Query: 593 QDTHTTAVMRSAN*SVTSLKAVRGT*GTIGSNINLLMMNITAAIVLVCVENLISKY 426
           QD     VM   +  +TS++       TIG  + ++++NI+      C+E+ I+ +
Sbjct: 424 QDITRNYVMDCMDSYLTSVQTAAQAVDTIGWKMGVMLLNISVYFEAKCLESKIASF 479


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 565 RITAVVCVSCATLIAVGGLQAIVTLGM 645
           RI  ++ V+C + I  GG++  +  GM
Sbjct: 62  RIVYLIIVACGSFIITGGIEFAIAYGM 88


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 528 ERHVRNNRQQ-HQFADDEHHGSNRSGVCRKSY 436
           +RH R+N+ +  + +D+E H S++    R+SY
Sbjct: 174 DRHHRSNQDRSRERSDNEQHSSDKREHSRRSY 205


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 381 LFTSVPQTATVVELRVFRDKIFDTHQN-DCCRDVHHQQIDVA 503
           LF    Q   VV + + RD++ ++H     C  +H Q ++ A
Sbjct: 27  LFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYA 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,823
Number of Sequences: 5004
Number of extensions: 51741
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)