Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5p13
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504     31   0.65 
08_02_0984 + 23294646-23294677,23294805-23294892,23295450-23296226     29   3.5  
08_02_0786 + 21198247-21198921                                         28   8.0  

>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
          Length = 681

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 237 YFCDIGSYCKSHNQHHFA-RCASRDISKRNAILGVCSVSDHCNI---SHSRYLFTSV 395
           Y C  GS C++ +   +   C +R +     ILG C++ DH  +   S ++++ T+V
Sbjct: 268 YACTTGSNCQNISSGGYTCECTNRYLQGNPYILGGCNMQDHITVLETSEAQFIVTNV 324


>08_02_0984 + 23294646-23294677,23294805-23294892,23295450-23296226
          Length = 298

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 435 DKIFDTHQNDCCRDVHHQ 488
           D IFD HQ+D C D  H+
Sbjct: 209 DHIFDVHQDDNCSDTEHE 226


>08_02_0786 + 21198247-21198921
          Length = 224

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 381 NNGCEKCYNDQRQSRRPILRSS 316
           NN C KCY D  ++  P+  SS
Sbjct: 94  NNMCSKCYRDHLKATSPLFSSS 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,588,726
Number of Sequences: 37544
Number of extensions: 316715
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)