Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5p09
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0ZPT9 Cluster: Opsin; n=2; Strongylocentrotus|Rep: Ops...    35   1.6  
UniRef50_Q2U792 Cluster: Uncharacterized conserved protein; n=1;...    33   8.4  

>UniRef50_Q0ZPT9 Cluster: Opsin; n=2; Strongylocentrotus|Rep: Opsin
           - Strongylocentrotus droebachiensis (Sea urchin)
          Length = 371

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
 Frame = +2

Query: 335 KTLALLYYICTYIFFVYNALYGVIQKRFL*ILQRVSYNAEPIYRVIGGIT--VNIKKKRS 508
           KT   + YIC   FF++    G+I   +  I QRVS ++  +     G+T   NI +K +
Sbjct: 185 KTPLFVSYICYMFFFLFFLPLGLISWSYFKIYQRVSQHSNSMRTSFTGVTKETNIDEKHA 244

Query: 509 -VAKCRCQQ--REPTSFLR 556
            + K +  Q   +P +FLR
Sbjct: 245 WLEKMKTTQILHKPVTFLR 263


>UniRef50_Q2U792 Cluster: Uncharacterized conserved protein; n=1;
           Aspergillus oryzae|Rep: Uncharacterized conserved
           protein - Aspergillus oryzae
          Length = 476

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 544 RWFALLAATLRYRPFFFYIYSNSPYYTVDWFRVIGN 437
           +W  L+A T+ Y P+F  +Y NS Y T  WF ++G+
Sbjct: 78  KW-VLVAGTIGYVPYFAALYCNSVYGT-QWFLLLGS 111


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,636,862
Number of Sequences: 1657284
Number of extensions: 11251485
Number of successful extensions: 23991
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23959
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)