Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5p09
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   4.4  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   7.6  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   7.6  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   7.6  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 311 FVPSF*IVKTLALLYYICTYIFFVYNALYGVIQKRFL*ILQRVSY 445
           F+P F  V   ALL Y     F   +A +G++ KR L  +Q+V++
Sbjct: 825 FIPVFNPVTQGALLMYTILVPFIALSAAFGIMNKR-LGGIQQVTF 868


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 456 GSAL*ETRCSIHKKRFCMTPYNALYTKNI 370
           GS + +T CS+H    C + ++ L  KNI
Sbjct: 384 GSKIEDTPCSLHNVPGCFSCFDRLGEKNI 412


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 347 LLYYICTYIFFVYNALYGVIQ 409
           +L  + TY  FVY  LYG+++
Sbjct: 307 ILLVVSTYTAFVYGILYGLLE 327


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 110  PYNVFSYNAISVPSITR 160
            PYNVF Y A  VP + R
Sbjct: 1074 PYNVFIYTAFVVPRLDR 1090


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,416
Number of Sequences: 5004
Number of extensions: 52549
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)