Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5p08
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 28 0.92
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 27 1.2
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 2.1
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 27 2.1
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 2.8
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 26 2.8
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 25 4.9
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 4.9
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 6.5
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 25 8.5
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 25 8.5
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 8.5
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.9 bits (59), Expect = 0.92
Identities = 25/83 (30%), Positives = 37/83 (44%)
Frame = -2
Query: 405 VRSSGPTCELC*SRPLGRRLGRKVHFFRRSNSCRDHRPRRLTAP*RSQTFSKQNFPSLLC 226
+R G + + +R LG LG N RP LT Q+FS +FPSL+
Sbjct: 1523 IRVVGLSVSVANARDLGEWLGTSPQCI--FNFSPKDRPNPLTI--HLQSFSITHFPSLML 1578
Query: 225 DLNRPKPFLFHFYITLYSSTIQF 157
+++P +I+ STI F
Sbjct: 1579 AMSKPIYRSLKNFISQRKSTIVF 1601
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 267 SQTFSKQNFPSLLCDLNRPKPFLFHFYITLYSSTIQFFYVHS 142
S T +++ L+ L+ P L HF L ++ QF Y HS
Sbjct: 447 SNTMHERHIRLLVSYLSNRFPILLHFPFLLKKNSAQFAYSHS 488
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 255 KKSENATEQSVAEDDDRDR-SSIAEKNVPYDP 347
+K + A +SV DD D I+ K V YDP
Sbjct: 239 RKKDEADAESVLSSDDNDSIEEISIKKVKYDP 270
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 388 RTGRSDTGASARAERSHTRRYSPRRSWDRY 477
R D +S R E S R YSP R DRY
Sbjct: 37 RRNYRDERSSRRYEDSQRRDYSPARRRDRY 66
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.2 bits (55), Expect = 2.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 282 SVAEDDDRDRSSIAEKNVPY 341
S+ +DD ++ +AE+NVPY
Sbjct: 3 SIPNEDDLEKLLVAEQNVPY 22
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 270 RSQTFSKQNFPSLLCDLNRPKP 205
RS FSKQ F LC N P+P
Sbjct: 143 RSSEFSKQFFSERLCKPNVPEP 164
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 464 DLRGLYLLVCDLSALADAPVSDLPVRLVNFADRAHWA 354
+L+ L L D+S ++ P S L + FA+R H A
Sbjct: 70 NLQFLLYLNLDMSEMSTVPASTLVTYVQTFANRGHQA 106
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 206 HFCFTFTSLCIQVLFNSFMCTVTILMA 126
HFC F + I V S++ TVT ++A
Sbjct: 141 HFCLYFIYIAIGVFGCSYIYTVTFIIA 167
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 207 ASGDSDHIEVMESSVLKKSENATEQSVAEDDD 302
AS D + +++ ES ++E + VAEDDD
Sbjct: 326 ASEDEEDVDMHESISDNENEGIKDIPVAEDDD 357
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 303 RDRSSIAEKNVPYDPAVGPMGAISKVHKSDRKIG 404
R+ SS A +N+P PA+ P+ + + + R G
Sbjct: 206 RNHSSNALRNIPIIPAIMPIQSYGSLKRMTRLCG 239
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +3
Query: 249 VLKKSENATEQS---VAEDDDRDRSSIAEKNVPYDPAVGPMGAISKVHKSDRK 398
+L++ E E+ VAE D + E PAV S + K++RK
Sbjct: 433 ILREQEELIEEEAEHVAEHPDLAKKQTEENKATSKPAVSAKSPESNIPKNERK 485
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 192 SETKMASGDSDHIEVMESSVLKKSENA---TEQSVAEDDD 302
++ + + D+DH + VLK SE+A E+ +A DD
Sbjct: 358 AKNESGASDNDHKANVHVFVLKSSEDAITLNEEKIATQDD 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,246
Number of Sequences: 5004
Number of extensions: 40998
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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