Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5p07
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 234 7e-63
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 27 2.3
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 26 4.0
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar... 26 4.0
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 4.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.0
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.3
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 5.3
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 5.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.1
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 7.1
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 9.3
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 234 bits (573), Expect = 7e-63
Identities = 113/218 (51%), Positives = 147/218 (67%), Gaps = 4/218 (1%)
Frame = +2
Query: 2 LLHFHLKHAIMFGKKKHVDVQFYTEVGEITTD-LG--KHQHMH-DRDDLAAEQSERELRH 169
L+H HLK IM GK+K DVQFY EV +I D G K ++M+ D D+L EQ ER R
Sbjct: 722 LIHVHLKAPIMVGKRKTQDVQFYREVSDIQFDETGNKKRKYMYGDEDELEQEQEERRRRA 781
Query: 170 KLKVAFKSFCERVENMTKQEVEFDTPFRELGFPGAPYRSTVLLQPTSGALVNLTEWPPFV 349
+L FKSF E++ ++ +E D PFREL F G P+RS VLLQPT+ LV LT+ P V
Sbjct: 782 QLDREFKSFAEKIAEASEGRIELDIPFRELAFNGVPFRSNVLLQPTTDCLVQLTDTPFTV 841
Query: 350 IALEDVELVHFERVQFHLKNFDMVFVFKDYAKKVAMVNAVPMDMLDHVKEWLNSCDIRYS 529
I L ++E+ H ERVQF LKNFD+VF+F+D+ + +N +PM+ LD+VKEWL+SCDI +
Sbjct: 842 ITLNEIEIAHLERVQFGLKNFDLVFIFQDFRRPPIHINTIPMEQLDNVKEWLDSCDICFY 901
Query: 530 EGIQSLNWTKVMKTITDDIEGFFENGGWSFLDPESDGE 643
EG +LNWT +MKT+ +D FFE GGW FL SD E
Sbjct: 902 EGPLNLNWTTIMKTVNEDPIAFFEEGGWGFLGAPSDDE 939
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 137 AAEQSERELRHKLKVAFKSFCERVENMTKQEVEFD 241
AAE+SE E H + F S E + +M ++ FD
Sbjct: 527 AAEESEEEKEHTKGIKFSSDEESLSDMEEENETFD 561
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = +2
Query: 407 NFDMVFVFKDYAKKVAMVNAVPMDMLDHVKEWLNSCDIRYSEGIQSLNWTKVMKTITD 580
N M+F++ ++ + ++ D + +N+C R S SL W K ++ T+
Sbjct: 137 NIGMIFLYT-HSGMTHITPSIRNDSTKFLSLLINACKDRLSSSAISLQWKKTLECFTN 193
>SPCC970.06 |||cargo receptor for soluble proteins
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 4.0
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Frame = +2
Query: 134 LAAEQSERELRHKLKVAFKSFCERVENMTKQEVEFDTPFRELGFPGAPYRSTVLLQPT-- 307
L+ Q + R + + K+F ER +Q F PF P P L+ T
Sbjct: 12 LSMNQDSYQTRTTVGIRKKTFSERACQFMEQAETFMAPFT----PYMPLLGRFLIVATYF 67
Query: 308 SGALVNLTEWPPFVIALEDVELVHF 382
A+ +T+WP V + D F
Sbjct: 68 EDAIRIVTQWPEQVSYMRDYRRFRF 92
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 645 FSPSDSGSKNDQPPFSKKPSMSSVIVFITLVQ 550
+ SD SKN +PPF KK S ++ + VQ
Sbjct: 305 YMKSDKSSKNFKPPFQKK-SWEDLVDCVKTVQ 335
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -1
Query: 396 NCTLSKWTSSTSSNAITNGGHSVRLTRAPEVGCSKTVLRYGAPGKPSSLKGVSNSTS 226
+ T S WT+ TSS+AIT+ SV + P S + + PS+ + S++
Sbjct: 922 SATSSSWTAETSSSAITS---SVAASVTPTSSSSASSWSSSSEVDPSTAASATGSST 975
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 205 SREHDQARSRVRYTFQRAWFPWSSISEYS 291
S +D++ R RY+ R+ P S+ISEYS
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYS 230
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 293 LLQPTSGALVNLTEWPPFVIALEDVELVHFE 385
L P+S LV++ W P++I + ++E
Sbjct: 238 LWDPSSSGLVSIYAWAPYLIDFNRIRFYNYE 268
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 484 QHVHRHGINHGHFLGVVLKYEDHIEIFEVKLYSL 383
QH H + HF G+ + D I+ + KLY +
Sbjct: 339 QHHQCHPLIKTHFFGIFGQKIDAIDFYSAKLYKI 372
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +2
Query: 41 KKKHVDVQFYTEVGEIT---TDLGKHQHMHDRDDLAAEQSERELRHKLKVAFKSFCERVE 211
KK +D + T E T DL K QH HD + E+ L+ K + E E
Sbjct: 1303 KKMELDNRLTTTDAEFTKVVADLEKLQHEHDDWLIQRGDLEKALKDSEKNFLRKEAEMTE 1362
Query: 212 NMTKQE 229
N+ E
Sbjct: 1363 NIHSLE 1368
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 384 REYNFTSKISIWSSYLRTTPRKWP 455
+ +NF IW Y+ TT +WP
Sbjct: 242 KNHNFVKGTKIWGDYINTT--QWP 263
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 9.3
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = -1
Query: 369 STSSNAITNGGHSVRLTRAPEVGCSKTVLRYGAPGKPSSLKGVSNSTSCLVMFSTRSQK 193
S+SSN ++ + +R ++ + ++ L AP PSSL +NSTS ST SQK
Sbjct: 2 SSSSNTSSHRSYGLRRSQR-SMNLNRATLL--APPTPSSLYDANNSTS-----STSSQK 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,186
Number of Sequences: 5004
Number of extensions: 57083
Number of successful extensions: 208
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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