Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5p07
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0357 + 14852584-14853058,14853116-14855754                      200   8e-52
12_02_0189 + 15165485-15168694                                        164   5e-41
08_02_0610 + 19307537-19308011,19308187-19310846                       97   1e-20
06_01_0903 - 6939672-6939782,6940051-6940110,6940221-6940322,694...    30   1.4  
03_05_0608 - 26086437-26086892,26091253-26091921                       30   1.4  
11_06_0399 - 23129476-23129745,23131040-23131121,23131216-231317...    30   1.8  
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334...    29   2.4  
04_02_0019 - 8608552-8608719,8609522-8609797                           29   3.2  
12_01_1077 - 11193337-11193405,11194961-11195122,11195809-111963...    28   5.5  
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254...    28   5.5  
05_04_0202 - 19010953-19013355                                         28   5.5  
08_01_0397 - 3509186-3510291,3510322-3512335                           28   7.3  
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979     28   7.3  
01_05_0228 - 19535480-19536169,19536397-19536399                       28   7.3  
08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603     27   9.7  
03_04_0004 + 16234648-16234731,16235178-16235237,16235598-162356...    27   9.7  

>04_03_0357 + 14852584-14853058,14853116-14855754
          Length = 1037

 Score =  200 bits (488), Expect = 8e-52
 Identities = 97/222 (43%), Positives = 142/222 (63%), Gaps = 8/222 (3%)
 Frame = +2

Query: 2    LLHFHLKHAIMFGKKKHVDVQFYTEVGEITTDLGKHQHMH-DRDDLAAEQSERELRHKLK 178
            LLHFHL + IM G KK  DVQFY EV ++   LG ++    D D++  EQ ER+ ++++ 
Sbjct: 706  LLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGNRRSALDPDEIEEEQRERDRKNRIN 765

Query: 179  VAFKSFCERVENMTKQ------EVEFDTPFRELGFPGAPYRSTVLLQPTSGALVNLTEWP 340
            + F++F  +V +   Q      ++EFD P RELGF G PY+++  + PTS  LV L E P
Sbjct: 766  MDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETP 825

Query: 341  PFVIALEDVELVHFERVQFHLKNFDMVFVFKDYAKKVAMVNAVPMDMLDHVKEWLNSCDI 520
              V+ L ++E+V+ ERV F  KNFDM  VFKD+ K V  ++++P   LD +KEWL++ D+
Sbjct: 826  FLVVTLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSTSLDAIKEWLDTTDL 885

Query: 521  RYSEGIQSLNWTKVMKTITDDIEGFFENGGWSFLDPE-SDGE 643
            +Y E   +LNW  ++KTI DD + F ++GGW FL+ E SD E
Sbjct: 886  KYYESRLNLNWRPILKTIIDDPQKFIDDGGWEFLNMEASDSE 927


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score =  164 bits (399), Expect = 5e-41
 Identities = 86/218 (39%), Positives = 129/218 (59%), Gaps = 7/218 (3%)
 Frame = +2

Query: 2    LLHFHLKHAIMFGKKKHVDVQFYTEVGEITTDLG-KHQHMHDRDDLAAEQSERELRHKLK 178
            LLHFHL + IM G KK  DVQFY EV +    +G + +   D D++  EQ ER  R  + 
Sbjct: 739  LLHFHLYNDIMVGNKKTRDVQFYIEVMDTVDSVGLRRRTAWDPDEIEEEQRERARRSGIN 798

Query: 179  VAFKSFCERVENMTKQE------VEFDTPFRELGFPGAPYRSTVLLQPTSGALVNLTEWP 340
              F+ F +RV ++  Q       ++F+TP ++LGF G   R+T  + PT   LV L E P
Sbjct: 799  RQFELFVKRVNSIWSQPRFEQLGLQFETPSQKLGFNGVHGRTTCFIVPTPSCLVQLVESP 858

Query: 341  PFVIALEDVELVHFERVQFHLKNFDMVFVFKDYAKKVAMVNAVPMDMLDHVKEWLNSCDI 520
              V +L +V++V  ERV    K+FDMVFVF+D  + V  +  +PM  +D +K+WLN C++
Sbjct: 859  FLVTSLREVDIVCLERVALGQKSFDMVFVFQDLKRDVIRIEVIPMTSIDGIKDWLNGCNL 918

Query: 521  RYSEGIQSLNWTKVMKTITDDIEGFFENGGWSFLDPES 634
            +Y E   +L+W KV+K + ++ E   EN  W FL+P++
Sbjct: 919  KYYESKLNLSWRKVLKEVMNNKES-DENNRWEFLNPDA 955


>08_02_0610 + 19307537-19308011,19308187-19310846
          Length = 1044

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 7/120 (5%)
 Frame = +2

Query: 2    LLHFHLKHAIMFGKKKHVDVQFYTEVGEITTDLGKHQHMH-DRDDLAAEQSERELRHKLK 178
            LLHFHL + IM G KK  DVQFY EV ++   LG ++    D D++  EQ ER+ ++++ 
Sbjct: 666  LLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGNRRSALDPDEIEEEQRERDRKNRIN 725

Query: 179  VAFKSFCERVENMTKQ------EVEFDTPFRELGFPGAPYRSTVLLQPTSGALVNLTEWP 340
            + F++F  +V +   Q      ++EFD P RELGF G PY+++  + PTS  LV L E P
Sbjct: 726  MDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETP 785


>06_01_0903 -
           6939672-6939782,6940051-6940110,6940221-6940322,
           6940464-6940513,6940686-6940750,6940849-6940931,
           6941117-6941140,6941798-6941856,6942041-6942174,
           6942823-6942884,6942908-6942976
          Length = 272

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 479 MLDHVKEWLNSCDIRYSEGIQSLNWTKVM---KTITDDIEGFFENGGWSFLDPE 631
           ++DH   W     +R+++ I    W++++   KTI   +  + E G W +L  E
Sbjct: 207 LIDH---WCQFLQVRHNKAISRDTWSQLLEFVKTIDPQLSNYDEEGAWPYLIDE 257


>03_05_0608 - 26086437-26086892,26091253-26091921
          Length = 374

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 475 HRHGINHGHFLGVVLKYEDHIEIFEVKL 392
           HRHG  HGH  G+ +   D +E  +V+L
Sbjct: 188 HRHGHGHGHGHGMAVAKPDDVEATQVQL 215


>11_06_0399 -
           23129476-23129745,23131040-23131121,23131216-23131711,
           23132135-23132699,23132825-23132893
          Length = 493

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 435 SLNTKTISKFLR*NCTLSKWTSSTSSNAIT-NGGH 334
           SLN K  S+F+R +  ++    S SSN  T NGGH
Sbjct: 53  SLNLKETSEFVRSSFPMATMARSNSSNGATGNGGH 87


>01_01_0450 -
           3344203-3344259,3344339-3344506,3344743-3344956,
           3345039-3345101,3345582-3345769,3345846-3346029,
           3346535-3346606,3346676-3346787,3346878-3346953,
           3347050-3347100,3347179-3347260,3347331-3347567,
           3347650-3347772,3348141-3348326,3348680-3349625,
           3350426-3350551,3350683-3350811,3350918-3351049,
           3351167-3351301,3351450-3351575,3352080-3352148,
           3352149-3352205,3352302-3352436,3352600-3352704,
           3352841-3352906,3353333-3353503,3353806-3353983
          Length = 1395

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 627 GSKNDQPPFSKKPSMSSVIVFITLVQFNDCIPSE 526
           G +N   PF K+P  S   +F TL+ +N C  +E
Sbjct: 777 GGRNSISPF-KRPRSSRCTIFFTLLTYNSCDQTE 809


>04_02_0019 - 8608552-8608719,8609522-8609797
          Length = 147

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
 Frame = +2

Query: 293 LLQPTSGALVNLTEWPPFVIALEDVELVHFERVQFHL-KNFDMVFVFKDYAKKVAMVNAV 469
           LL  T   LV   E   + + L D E  H       L K   M   F+   K    +   
Sbjct: 41  LLNDTDLDLVGDRERQAYYM-LSDREYAHTREYSLELLKKIGMDVEFRSVWKATGEIQYN 99

Query: 470 PMDMLDHVKEWLNSCDIRYSEGIQSLNWTKVMKTITDDIEGFFENGGWS 616
             + +  ++EW  S D +YS      N+  +M+   DD+  +F   G++
Sbjct: 100 LTEHIAQMQEWQQSTDAQYS------NFNNMMQQQHDDLHAYFRFQGFN 142


>12_01_1077 -
           11193337-11193405,11194961-11195122,11195809-11196324,
           11198132-11198248,11198376-11198545,11199676-11199757,
           11200515-11200624,11201264-11201342
          Length = 434

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 235 LDFLLGHVLDSFTEALEGHLQFVSQLPFALLGGEVVAV 122
           LDF+  H++++    ++ HLQFV      ++   V AV
Sbjct: 245 LDFIKNHLMEALDRNIDDHLQFVLGTESGMITSIVAAV 282


>06_03_0970 +
           26424209-26424910,26425053-26425109,26425251-26425478,
           26425788-26425881,26425955-26426161,26426581-26426711,
           26426943-26426992,26427125-26427432,26427548-26427651,
           26427810-26428526,26429159-26429338,26429703-26429831
          Length = 968

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 458 VNAVPMDMLDHVKEWLNSCDIRYSEGIQSLNWTKVMKTI 574
           VN V MD+ D V       DIR  E +Q    T++ K++
Sbjct: 319 VNYVAMDITDQVTRREKMADIRVREAVQKAKETELSKSL 357


>05_04_0202 - 19010953-19013355
          Length = 800

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -3

Query: 574 YSFHNFGPVQRLYTLRVPDITRIQPFFDMIQHVHRHGI 461
           + +H F P+  LY+ +   ++ I+   DM++ +HR+GI
Sbjct: 347 FPYHFFSPMN-LYSSKGLSVSAIKSMKDMVRVMHRNGI 383


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 104 KHQHMHDRDDLAAEQSERELRHKLK 178
           +H H  DRDD      +RE RH+ K
Sbjct: 40  RHHHREDRDDDRDRDRDRERRHREK 64


>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
          Length = 304

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 642 SPSDSGSKNDQPPFSKKPSMSSVI--VFIT 559
           +PS SGS N  PP S +  +S+VI  VF+T
Sbjct: 104 NPSGSGSGNGNPPPSPQLQLSTVIADVFVT 133


>01_05_0228 - 19535480-19536169,19536397-19536399
          Length = 230

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 425 VFKDYAKKVAMVNAVP--MDMLDHVKEWLNSCDIRYSEGIQSLNWTKVMKTITDDIE 589
           V K+++    + N +    D+++ +  WL +   +     +S NW K +K    D E
Sbjct: 31  VIKEFSSMAGVSNDLQELQDLVEEINNWLQTVGDKAMRNDRSSNWLKKLKDAAYDAE 87


>08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603
          Length = 134

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 555 VQFNDCIPSEYRISQEFNH 499
           ++ N  IPS Y++S +FNH
Sbjct: 54  IRHNRMIPSRYQVSDDFNH 72


>03_04_0004 +
           16234648-16234731,16235178-16235237,16235598-16235627,
           16235859-16235909,16235978-16236076,16236410-16236469,
           16236534-16236623,16237011-16237112,16237195-16237305,
           16237952-16238068,16238153-16238233,16239089-16239169,
           16239798-16239875,16239949-16240088,16240205-16240304,
           16240836-16240954,16241152-16241287,16241371-16241501,
           16242222-16242298,16242451-16242562,16242638-16242693,
           16243724-16243839,16245538-16245622,16245703-16245806,
           16246469-16246597,16246888-16246938
          Length = 799

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 167 HKLKVAFKSFCERVENMTKQEVEF 238
           HKLK ++ S C+  ENM K  + +
Sbjct: 753 HKLKASYCSMCKNGENMAKMRMPY 776


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,482,800
Number of Sequences: 37544
Number of extensions: 376400
Number of successful extensions: 1150
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)