Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5p07
         (645 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF152961-1|AAD43978.1| 1047|Homo sapiens chromatin-specific tran...   381   e-105
AF164924-1|AAF28231.1|  247|Homo sapiens SPT16/CDC68 protein pro...   235   7e-62
AK127075-1|BAC86814.1| 1332|Homo sapiens protein ( Homo sapiens ...    31   4.6  
BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein.        30   8.1  
AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein.                30   8.1  
AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein.     30   8.1  

>AF152961-1|AAD43978.1| 1047|Homo sapiens chromatin-specific
            transcription elongation factor FACT 140 kDa subunit
            protein.
          Length = 1047

 Score =  381 bits (937), Expect = e-105
 Identities = 164/213 (76%), Positives = 192/213 (90%)
 Frame = +2

Query: 2    LLHFHLKHAIMFGKKKHVDVQFYTEVGEITTDLGKHQHMHDRDDLAAEQSERELRHKLKV 181
            +LHFHLK+AIMFGKK+H DVQFYTEVGEITTDLGKHQHMHDRDDL AEQ ERE+RHKLK 
Sbjct: 719  VLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKT 778

Query: 182  AFKSFCERVENMTKQEVEFDTPFRELGFPGAPYRSTVLLQPTSGALVNLTEWPPFVIALE 361
            AFK+F E+VE +TK+E+EF+ PFR+LGF GAPYRST LLQPTS ALVN TEWPPFV+ L+
Sbjct: 779  AFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLD 838

Query: 362  DVELVHFERVQFHLKNFDMVFVFKDYAKKVAMVNAVPMDMLDHVKEWLNSCDIRYSEGIQ 541
            +VEL+HFERVQFHLKNFDMV V+KDY+KKV M+NA+P+  LD +KEWLNSCD++Y+EG+Q
Sbjct: 839  EVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQ 898

Query: 542  SLNWTKVMKTITDDIEGFFENGGWSFLDPESDG 640
            SLNWTK+MKTI DD EGFFE GGWSFL+PE +G
Sbjct: 899  SLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEG 931


>AF164924-1|AAF28231.1|  247|Homo sapiens SPT16/CDC68 protein
           protein.
          Length = 247

 Score =  235 bits (576), Expect = 7e-62
 Identities = 99/131 (75%), Positives = 117/131 (89%)
 Frame = +2

Query: 248 FRELGFPGAPYRSTVLLQPTSGALVNLTEWPPFVIALEDVELVHFERVQFHLKNFDMVFV 427
           FR+LGF GAPYRST LLQPTS ALVN TEWPPFV+ L++VEL+HFERVQFHLKNFDMV V
Sbjct: 1   FRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIV 60

Query: 428 FKDYAKKVAMVNAVPMDMLDHVKEWLNSCDIRYSEGIQSLNWTKVMKTITDDIEGFFENG 607
           +KDY+KKV M+NA+P+  LD +KEWLNSCD++Y+EG+QSLNWTK+MKTI DD EGFFE G
Sbjct: 61  YKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQG 120

Query: 608 GWSFLDPESDG 640
           GWSFL+PE +G
Sbjct: 121 GWSFLEPEGEG 131


>AK127075-1|BAC86814.1| 1332|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45132 fis, clone BRAWH3037979, highly  similar
           to Ubiquitin carboxyl-terminal hydrolase 24 (EC
           3.1.2.15). ).
          Length = 1332

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 550 VQRLYTLRVPDITRIQPFFDMIQHVHRHGIN-HGHFLGVVLKYEDHIEIFEVKLYS 386
           ++RL  L    +  I+ F+ + + +  HG + HGH L + + YE   + F V+ +S
Sbjct: 174 IERLLLLAERYVITIEDFYSVPRTILPHGASFHGHLLTLNVTYESTKDTFTVEAHS 229


>BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein.
          Length = 1481

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 107 HQHMHDRDDLAAEQSERELRHKLKVAFKSFCERVENMTKQEVE 235
           HQH   RD L A+Q+E+E   ++     S  +R+   +K+  E
Sbjct: 114 HQHRRSRDLLKAKQTEKEKSQEVSSKSGSMKDRISGSSKRSNE 156


>AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein.
          Length = 1490

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 107 HQHMHDRDDLAAEQSERELRHKLKVAFKSFCERVENMTKQEVE 235
           HQH   RD L A+Q+E+E   ++     S  +R+   +K+  E
Sbjct: 114 HQHRRSRDLLKAKQTEKEKSQEVSSKSGSMKDRISGSSKRSNE 156


>AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein.
          Length = 1535

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 107 HQHMHDRDDLAAEQSERELRHKLKVAFKSFCERVENMTKQEVE 235
           HQH   RD L A+Q+E+E   ++     S  +R+   +K+  E
Sbjct: 168 HQHRRSRDLLKAKQTEKEKSQEVSSKSGSMKDRISGSSKRSNE 210


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,212,191
Number of Sequences: 237096
Number of extensions: 2028172
Number of successful extensions: 5504
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5504
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)