Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5p07
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical ... 324 4e-89
AC006644-3|AAF39838.2| 491|Caenorhabditis elegans Hypothetical ... 35 0.057
Z75550-2|CAA99928.2| 421|Caenorhabditis elegans Hypothetical pr... 31 0.92
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 30 1.6
AF016657-1|AAB93653.1| 361|Caenorhabditis elegans Hypothetical ... 29 2.1
U40029-10|AAN65326.1| 644|Caenorhabditis elegans Hypothetical p... 29 2.8
U40029-9|AAN65325.1| 727|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL132863-7|CAJ80822.1| 231|Caenorhabditis elegans Hypothetical ... 29 2.8
AF025468-6|AAB71043.2| 283|Caenorhabditis elegans Hypothetical ... 29 2.8
U58750-14|AAB00655.4| 340|Caenorhabditis elegans Hypothetical p... 29 3.7
Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL132863-3|CAB60570.1| 412|Caenorhabditis elegans Hypothetical ... 28 4.9
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 28 4.9
Z81098-9|CAB03185.3| 364|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81079-9|CAB03085.3| 364|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z30973-4|CAA83220.3| 431|Caenorhabditis elegans Hypothetical pr... 28 6.5
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 28 6.5
AL032636-1|CAA21605.1| 343|Caenorhabditis elegans Hypothetical ... 28 6.5
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr... 27 8.6
>AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical
protein F55A3.3 protein.
Length = 1030
Score = 324 bits (795), Expect = 4e-89
Identities = 142/214 (66%), Positives = 169/214 (78%)
Frame = +2
Query: 2 LLHFHLKHAIMFGKKKHVDVQFYTEVGEITTDLGKHQHMHDRDDLAAEQSERELRHKLKV 181
LLHFHLK+ +++GKKK+ DVQFYTEVGEITTDLGK+ HM DRDD+ +EQ ERE+R +L
Sbjct: 719 LLHFHLKNPVLWGKKKYKDVQFYTEVGEITTDLGKYHHMQDRDDMQSEQQEREMRRRLNA 778
Query: 182 AFKSFCERVENMTKQEVEFDTPFRELGFPGAPYRSTVLLQPTSGALVNLTEWPPFVIALE 361
AF SFCE+V +T + EFD+PF LGF G PYRS L+PT+ LVNLTEWP F++ L
Sbjct: 779 AFNSFCEKVSRLTNDQFEFDSPFAGLGFFGVPYRSATTLKPTASCLVNLTEWPTFIVTLS 838
Query: 362 DVELVHFERVQFHLKNFDMVFVFKDYAKKVAMVNAVPMDMLDHVKEWLNSCDIRYSEGIQ 541
+VELVHFERV LKNFDMVF+FKDY K MV +PM +D +KEWL++CDI YSEGIQ
Sbjct: 839 EVELVHFERVSLQLKNFDMVFIFKDYKIKPQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQ 898
Query: 542 SLNWTKVMKTITDDIEGFFENGGWSFLDPESDGE 643
SLNW KVMKTITDD+E FFE GGWSFL+ ESD E
Sbjct: 899 SLNWAKVMKTITDDLEAFFEEGGWSFLNVESDNE 932
>AC006644-3|AAF39838.2| 491|Caenorhabditis elegans Hypothetical
protein F55A3.7 protein.
Length = 491
Score = 34.7 bits (76), Expect = 0.057
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 584 IEGFFENGGWSFLDPESDGE 643
+ FFE GGWSFL+ ESD E
Sbjct: 413 LRAFFEEGGWSFLNAESDNE 432
>Z75550-2|CAA99928.2| 421|Caenorhabditis elegans Hypothetical
protein T22C1.3 protein.
Length = 421
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 456 WLMPCLWTCWIMSKNG*ILVISGTRRVYN 542
+LMP +W WI+S +G GT VYN
Sbjct: 355 FLMPVMWHMWIVSSSGNANFFFGTTIVYN 383
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = +2
Query: 41 KKKHVDVQFYTEVGEITTDLGKHQHMHDRDDLAAEQSERELRHKLKVAFKSFCERVENMT 220
KK FY GE GK + +H + + ELR + K + FC+ + T
Sbjct: 599 KKAIAATDFYFGAGEANFKGGKQEILHYNEFMGLRDEAYELRDEEKER-RFFCKAKKQPT 657
Query: 221 KQEVEFDTPFRELGFPGAPYRS 286
E E++ REL A +++
Sbjct: 658 NDE-EYEELHRELNDTEADFQA 678
>AF016657-1|AAB93653.1| 361|Caenorhabditis elegans Hypothetical
protein C16C4.7 protein.
Length = 361
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 184 LQELL*TSREHDQARSRVRYTFQRAWFPWSSI-SEYSFTAAYLRSPCQS 327
L+ L+ R +RSR+R+++ R W S S F A + S CQ+
Sbjct: 163 LRHLISICRISTFSRSRIRFSYSRIWLHISIFDSNIPFMAVFQHSTCQA 211
>U40029-10|AAN65326.1| 644|Caenorhabditis elegans Hypothetical
protein F10G7.9b protein.
Length = 644
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2
Query: 104 KHQHMHDRDDLAAEQSERELRHKLKVAFKSFCERVENMTKQEVEFDTPFRE 256
KH H+HD AEQ + L + AFK +E KQ + F FRE
Sbjct: 565 KHLHLHD--VTDAEQQAQLLEGLFREAFKYNESDIEPAVKQTLHFLPEFRE 613
>U40029-9|AAN65325.1| 727|Caenorhabditis elegans Hypothetical
protein F10G7.9a protein.
Length = 727
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2
Query: 104 KHQHMHDRDDLAAEQSERELRHKLKVAFKSFCERVENMTKQEVEFDTPFRE 256
KH H+HD AEQ + L + AFK +E KQ + F FRE
Sbjct: 648 KHLHLHD--VTDAEQQAQLLEGLFREAFKYNESDIEPAVKQTLHFLPEFRE 696
>AL132863-7|CAJ80822.1| 231|Caenorhabditis elegans Hypothetical
protein Y37H2A.12 protein.
Length = 231
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +2
Query: 80 GEITTDLGKHQHMHDRDDLAAEQSERELRHK-LKVAFKSFCERVENMTKQEVEFDTPFRE 256
GEI K +D++ L A L+ K + A+K+FC+ + + + EFD F +
Sbjct: 9 GEIPDSAKKDLLRNDKNALRACILYEFLQKKPVFEAYKNFCKTIGDDLMEYREFDFWFYK 68
Query: 257 LGFPGAPYRSTVLLQPTSGALVNL 328
+G A ++ P S L N+
Sbjct: 69 IGKENADLSGKLIWNPDSLTLSNM 92
>AF025468-6|AAB71043.2| 283|Caenorhabditis elegans Hypothetical
protein T27A1.2 protein.
Length = 283
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 344 FVIALEDVELVHFERVQFHLKNFDMVFVFKD 436
FV L ++ V E V+F LKNFD+ F F +
Sbjct: 94 FVKVLGELSFVDTEDVEFILKNFDLKFGFSN 124
>U58750-14|AAB00655.4| 340|Caenorhabditis elegans Hypothetical
protein F55G1.15 protein.
Length = 340
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 68 YTEVGE--ITTDLGKHQHMHDRDDLAAEQSERELRHKLKVA 184
Y ++GE ITT G H H H E+ E HK KVA
Sbjct: 263 YFQLGEPRITTGHGGHGHSHGHGSADHEKHHSEDNHKDKVA 303
>Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical
protein Y70C5C.2 protein.
Length = 414
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 330 VRLTRAPE--VGCSKTVLRYGAPGKPSSLKGVSNSTSCLVMFST 205
V +T AP GC+ T++ +G P+ +N TSC + +T
Sbjct: 290 VTVTPAPSNPSGCNSTIMSFGTITSPNFPMNYNNITSCNYLLTT 333
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = +2
Query: 194 FCERVENMTKQEVEFDTPFRELGFPGAPYRSTVLLQPTSGALVNLTEWPPFVIALEDVEL 373
FCE+++ + E P E+ G ++ + + +L EWPP + D++L
Sbjct: 224 FCEKLDRCSPHVDEI-APLLEIISNGIQSTDAMVQTDAASSCASLAEWPPIYHYMSDLKL 282
>AL132863-3|CAB60570.1| 412|Caenorhabditis elegans Hypothetical
protein Y37H2A.5 protein.
Length = 412
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 182 AFKSFCERVENMTKQEVEFDTPFRELGFPGAPYRSTVLLQPTSGAL 319
A+KSFC+++ + + EFD F LG G S + P S L
Sbjct: 38 AYKSFCKQMGDDIMEYGEFDFWFYTLGKEGVALDSEISWNPKSKLL 83
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = +2
Query: 194 FCERVENMTKQEVEFDTPFRELGFPGAPYRSTVLLQPTSGALVNLTEWPPFVIALEDVEL 373
FCE+++ + E P E+ G ++ + + +L EWPP + D++L
Sbjct: 224 FCEKLDRCSPHVDEI-APLLEIISNGIQSTDAMVQTDAASSCASLAEWPPIYHYMSDLKL 282
>Z81098-9|CAB03185.3| 364|Caenorhabditis elegans Hypothetical
protein K07A12.5 protein.
Length = 364
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = +2
Query: 125 RDDLAAEQSERELRHKLKVAFKSFCERVENMTKQEVEFDTPFRELGFPGAPYRSTVLLQP 304
RD A E+ LR K K++ + ++ +N+ K + E+D P P ++ V
Sbjct: 97 RDHAAREKELDALRKKQKISLEQRKDKQDNIKKSQAEYDQMKSLYAAPVDPKQTKVETME 156
Query: 305 TSGALVNLTEWPPFVIALED 364
L FV+ D
Sbjct: 157 QKEVLEPTAPMEKFVVNTTD 176
>Z81079-9|CAB03085.3| 364|Caenorhabditis elegans Hypothetical
protein K07A12.5 protein.
Length = 364
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = +2
Query: 125 RDDLAAEQSERELRHKLKVAFKSFCERVENMTKQEVEFDTPFRELGFPGAPYRSTVLLQP 304
RD A E+ LR K K++ + ++ +N+ K + E+D P P ++ V
Sbjct: 97 RDHAAREKELDALRKKQKISLEQRKDKQDNIKKSQAEYDQMKSLYAAPVDPKQTKVETME 156
Query: 305 TSGALVNLTEWPPFVIALED 364
L FV+ D
Sbjct: 157 QKEVLEPTAPMEKFVVNTTD 176
>Z30973-4|CAA83220.3| 431|Caenorhabditis elegans Hypothetical
protein B0284.1 protein.
Length = 431
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = +2
Query: 14 HLKHAIMFGKKKHVDVQFYTEVGEITTDLGKHQHMHDRDDLAAEQSERELRHKLKVAFKS 193
+LK A+ G + +D Q E+T L HQ++ R+ ++E+++ +
Sbjct: 96 NLKEAVASGNQL-LDNQRIVNQAEVTKRLTDHQNLMTREQGRLAETEKKIEENVVDMKNK 154
Query: 194 FCERVENMTKQEVEFD 241
E E + ++ E+D
Sbjct: 155 KAEAQEKLHSEKKEYD 170
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
protein protein7 protein.
Length = 1217
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -1
Query: 369 STSSNAITNGGHSVRLTRAPEVGCSKTVLRYGAPGKPSSLKGVSNSTSCLVMF 211
STS+++ T+G S T G + T +GA G S G+S+S+S +F
Sbjct: 1062 STSNSSSTSGFPSSTATPFGNAGTTSTSGVFGAFGNKPSQPGLSSSSSTNSLF 1114
>AL032636-1|CAA21605.1| 343|Caenorhabditis elegans Hypothetical
protein Y40B1B.3 protein.
Length = 343
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/33 (30%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 356 LEDVELVHFERVQFHLKNFD-MVFVFKDYAKKV 451
LE ++ + FE+++F ++ FD + +F +Y ++V
Sbjct: 148 LEIIKTLDFEKIEFWIRTFDYFLILFSNYTREV 180
>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
protein T06E4.1 protein.
Length = 1295
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 41 KKKHVDVQFYTEVGEITTDLG-KHQHMHDRDDLAAEQSERELRHKLKV 181
K+ +D+Q + + E+ L K H RD +A EL+HKL V
Sbjct: 842 KQLQLDLQNFKQNAEVLESLNEKLNSSHKRDMVALASQLEELQHKLVV 889
>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
protein T20G5.5 protein.
Length = 1234
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 463 INHGHFLGVVLKYEDHIEIFEVKLYSLKVDE 371
I HFL V K+ DH++ F + ++ + DE
Sbjct: 302 IAQNHFLSVYNKHGDHLQPFIIIMHDILTDE 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,641,804
Number of Sequences: 27780
Number of extensions: 324858
Number of successful extensions: 1159
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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